45 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101476023	Nuclear receptor coactivator 3. (1514 aa)
	PER2	Period circadian regulator 2. (1491 aa)
	epas1	Endothelial PAS domain protein 1b. (905 aa)
	NCOA3	Nuclear receptor coactivator 3. (1519 aa)
	LOC101485591	Period circadian clock 2. (1437 aa)
	ahrr	Uncharacterized protein. (694 aa)
	LOC101474923	Aryl-hydrocarbon receptor nuclear translocator 2. (685 aa)
	LOC101467256	Hypoxia inducible factor 1 subunit alpha, like. (676 aa)
	LOC101478070	Clock circadian regulator b. (882 aa)
	LOC101472045	Uncharacterized protein. (650 aa)
	LOC101468685	Potassium voltage-gated channel, subfamily H (eag-related), member 6a. (1264 aa)
	kcnh4	Potassium voltage-gated channel, subfamily H (eag-related), member 4a. (1122 aa)
	ncoa1	Nuclear receptor coactivator 1. (1345 aa)
	LOC101479865	Period circadian clock 3. (1234 aa)
	ncoa2	Nuclear receptor coactivator. (1461 aa)
	per1	Period circadian clock 1b. (1417 aa)
	LOC101479217	Potassium voltage-gated channel, subfamily H (eag-related), member 3. (833 aa)
	LOC101465609	Potassium voltage-gated channel, subfamily H (eag-related), member 4b. (1185 aa)
	LOC112429649	Uncharacterized protein. (604 aa)
	CLOCK	Clock circadian regulator a. (790 aa)
	LOC101470055	Aryl hydrocarbon receptor nuclear translocator-like 2. (638 aa)
	LOC101487738	Uncharacterized protein. (947 aa)
	LOC101463617	Uncharacterized protein. (970 aa)
	LOC101474087	Uncharacterized protein. (761 aa)
	LOC101482208	Potassium channel, voltage gated eag related subfamily H, member 7. (1225 aa)
	LOC101484364	Uncharacterized protein. (1060 aa)
	npas1	Neuronal PAS domain protein 1. (812 aa)
	LOC101465807	Aryl hydrocarbon receptor nuclear translocator. (776 aa)
	LOC101478720	Aryl hydrocarbon receptor 2. (958 aa)
	LOC101465117	Aryl hydrocarbon receptor 1b. (794 aa)
	LOC101475433	Neuronal PAS domain protein 2. (872 aa)
	ARNTL2	Aryl hydrocarbon receptor nuclear translocator like 2. (541 aa)
	LOC101482017	Uncharacterized protein. (953 aa)
	LOC101465128	Aryl hydrocarbon receptor nuclear translocator-like 1a. (602 aa)
	ENSMZEP00005011390	Potassium voltage-gated channel, subfamily H (eag-related), member 3. (375 aa)
	LOC101467662	Uncharacterized protein. (1073 aa)
	hif1a	Hypoxia inducible factor 1 subunit alpha a. (766 aa)
	pde8a	Phosphodiesterase. (818 aa)
	npas4	Neuronal PAS domain protein 4a. (929 aa)
	LOC101483328	Nuclear receptor coactivator. (1464 aa)
	LOC101473138	Uncharacterized protein. (357 aa)
	kcnh5	Potassium voltage-gated channel, subfamily H (eag-related), member 5b. (1046 aa)
	LOC101466106	Uncharacterized protein. (748 aa)
	NPAS3	Neuronal PAS domain protein 3. (996 aa)
	ENSMZEP00005000180	Uncharacterized protein. (380 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNTL2	CLOCK	ENSMZEP00005019973	ENSMZEP00005027083	Aryl hydrocarbon receptor nuclear translocator like 2.	Clock circadian regulator a.	0.841
ARNTL2	ENSMZEP00005000180	ENSMZEP00005019973	ENSMZEP00005000180	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.606
ARNTL2	LOC101463617	ENSMZEP00005019973	ENSMZEP00005024417	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.600
ARNTL2	LOC101465117	ENSMZEP00005019973	ENSMZEP00005020831	Aryl hydrocarbon receptor nuclear translocator like 2.	Aryl hydrocarbon receptor 1b.	0.600
ARNTL2	LOC101466106	ENSMZEP00005019973	ENSMZEP00005001616	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.418
ARNTL2	LOC101467256	ENSMZEP00005019973	ENSMZEP00005032844	Aryl hydrocarbon receptor nuclear translocator like 2.	Hypoxia inducible factor 1 subunit alpha, like.	0.567
ARNTL2	LOC101472045	ENSMZEP00005019973	ENSMZEP00005031132	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.418
ARNTL2	LOC101473138	ENSMZEP00005019973	ENSMZEP00005003836	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.567
ARNTL2	LOC101474087	ENSMZEP00005019973	ENSMZEP00005024344	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.418
ARNTL2	LOC101475433	ENSMZEP00005019973	ENSMZEP00005020229	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 2.	0.841
ARNTL2	LOC101478070	ENSMZEP00005019973	ENSMZEP00005031946	Aryl hydrocarbon receptor nuclear translocator like 2.	Clock circadian regulator b.	0.841
ARNTL2	LOC101478720	ENSMZEP00005019973	ENSMZEP00005020874	Aryl hydrocarbon receptor nuclear translocator like 2.	Aryl hydrocarbon receptor 2.	0.600
ARNTL2	LOC101479865	ENSMZEP00005019973	ENSMZEP00005029056	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian clock 3.	0.606
ARNTL2	LOC101485591	ENSMZEP00005019973	ENSMZEP00005034021	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian clock 2.	0.606
ARNTL2	LOC101487738	ENSMZEP00005019973	ENSMZEP00005024428	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.600
ARNTL2	NPAS3	ENSMZEP00005019973	ENSMZEP00005001298	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 3.	0.567
ARNTL2	PER2	ENSMZEP00005019973	ENSMZEP00005036880	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian regulator 2.	0.606
ARNTL2	ahrr	ENSMZEP00005019973	ENSMZEP00005033460	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.600
ARNTL2	epas1	ENSMZEP00005019973	ENSMZEP00005036552	Aryl hydrocarbon receptor nuclear translocator like 2.	Endothelial PAS domain protein 1b.	0.567
ARNTL2	hif1a	ENSMZEP00005019973	ENSMZEP00005009681	Aryl hydrocarbon receptor nuclear translocator like 2.	Hypoxia inducible factor 1 subunit alpha a.	0.567