(36 nodes) SNF2-like, N-terminal domain superfamily network (Maylandia zebra)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101478977	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2. (1585 aa)
	smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a. (1629 aa)
	smarcad1	Uncharacterized protein. (1021 aa)
	rad54b	RAD54 homolog B. (928 aa)
	chd5	Chromodomain helicase DNA binding protein 5. (1797 aa)
	ercc6l	Excision repair cross-complementation group 6-like. (1249 aa)
	LOC101475716	Uncharacterized protein. (1608 aa)
	ercc6l2	Excision repair cross-complementation group 6-like 2. (1535 aa)
	chd9	Chromodomain helicase DNA binding protein 9. (3007 aa)
	SMARCAL1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (899 aa)
	ep400	E1A binding protein p400. (2910 aa)
	ENSMZEP00005011307	Uncharacterized protein. (935 aa)
	smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1036 aa)
	chd7	Chromodomain helicase DNA binding protein 7. (3316 aa)
	chd1	Chromodomain helicase DNA binding protein 1. (1326 aa)
	atrx	ATRX chromatin remodeler. (1680 aa)
	chd8	Chromodomain-helicase-DNA-binding protein 8; DNA helicase that acts as a chromatin remodeling factor and regulates transcription. Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppresses p53/TP53-mediated apoptosis by recruiting histone H1 and preventing p53/TP53 transactivation activity. Acts as a negative regulator of Wnt signaling pathway by regulating beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-targeted gene expression by being recruited specifically to the promoter regions of several CTNNB1 responsive [...] (2521 aa)
	btaf1	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated. (1856 aa)
	LOC101468957	RAD54 like 2. (1506 aa)
	ino80	INO80 complex ATPase subunit. (1506 aa)
	shprh	SNF2 histone linker PHD RING helicase. (1661 aa)
	ENSMZEP00005018680	Uncharacterized protein. (1708 aa)
	ENSMZEP00005022380	Chromo domain-containing protein. (486 aa)
	chd2	Chromodomain helicase DNA binding protein 2. (1700 aa)
	LOC101465377	Uncharacterized protein. (1480 aa)
	chd4	Uncharacterized protein. (1813 aa)
	rad54l	RAD54 like. (739 aa)
	chd3	Chromodomain helicase DNA binding protein 3. (2127 aa)
	hells	Helicase, lymphoid specific. (849 aa)
	ttf2	Transcription termination factor, RNA polymerase II. (1146 aa)
	LOC101478593	Zinc finger, RAN-binding domain containing 3. (567 aa)
	chd1l	Chromodomain helicase DNA binding protein 1-like. (994 aa)
	LOC101484948	Chromodomain helicase DNA binding protein 4a. (1954 aa)
	hltf	Helicase-like transcription factor. (968 aa)
	ENSMZEP00005004336	Zinc finger, RAN-binding domain containing 3. (997 aa)
	ercc6	Excision repair cross-complementation group 6. (1439 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005004336	ENSMZEP00005022380	ENSMZEP00005004336	ENSMZEP00005022380	Zinc finger, RAN-binding domain containing 3.	Chromo domain-containing protein.	0.406
ENSMZEP00005004336	SMARCAL1	ENSMZEP00005004336	ENSMZEP00005010149	Zinc finger, RAN-binding domain containing 3.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	0.492
ENSMZEP00005011307	chd1l	ENSMZEP00005011307	ENSMZEP00005027934	Uncharacterized protein.	Chromodomain helicase DNA binding protein 1-like.	0.408
ENSMZEP00005011307	hells	ENSMZEP00005011307	ENSMZEP00005024649	Uncharacterized protein.	Helicase, lymphoid specific.	0.401
ENSMZEP00005011307	smarca5	ENSMZEP00005011307	ENSMZEP00005012485	Uncharacterized protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.462
ENSMZEP00005022380	ENSMZEP00005004336	ENSMZEP00005022380	ENSMZEP00005004336	Chromo domain-containing protein.	Zinc finger, RAN-binding domain containing 3.	0.406
ENSMZEP00005022380	LOC101478593	ENSMZEP00005022380	ENSMZEP00005027769	Chromo domain-containing protein.	Zinc finger, RAN-binding domain containing 3.	0.466
ENSMZEP00005022380	SMARCAL1	ENSMZEP00005022380	ENSMZEP00005010149	Chromo domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	0.432
ENSMZEP00005022380	btaf1	ENSMZEP00005022380	ENSMZEP00005016140	Chromo domain-containing protein.	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.	0.507
ENSMZEP00005022380	chd1l	ENSMZEP00005022380	ENSMZEP00005027934	Chromo domain-containing protein.	Chromodomain helicase DNA binding protein 1-like.	0.475
ENSMZEP00005022380	hells	ENSMZEP00005022380	ENSMZEP00005024649	Chromo domain-containing protein.	Helicase, lymphoid specific.	0.473
ENSMZEP00005022380	rad54b	ENSMZEP00005022380	ENSMZEP00005006884	Chromo domain-containing protein.	RAD54 homolog B.	0.477
ENSMZEP00005022380	smarca5	ENSMZEP00005022380	ENSMZEP00005012485	Chromo domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.625
ENSMZEP00005022380	ttf2	ENSMZEP00005022380	ENSMZEP00005025709	Chromo domain-containing protein.	Transcription termination factor, RNA polymerase II.	0.494
LOC101475716	hltf	ENSMZEP00005031997	ENSMZEP00005003885	Uncharacterized protein.	Helicase-like transcription factor.	0.433
LOC101475716	smarca5	ENSMZEP00005031997	ENSMZEP00005012485	Uncharacterized protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.593
LOC101478593	ENSMZEP00005022380	ENSMZEP00005027769	ENSMZEP00005022380	Zinc finger, RAN-binding domain containing 3.	Chromo domain-containing protein.	0.466
LOC101478593	SMARCAL1	ENSMZEP00005027769	ENSMZEP00005010149	Zinc finger, RAN-binding domain containing 3.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	0.464
LOC101478593	hltf	ENSMZEP00005027769	ENSMZEP00005003885	Zinc finger, RAN-binding domain containing 3.	Helicase-like transcription factor.	0.409
LOC101478977	hltf	ENSMZEP00005027794	ENSMZEP00005003885	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.	Helicase-like transcription factor.	0.427