17 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101474553	Cyclin-dependent kinase inhibitor 1A. (169 aa)
	ccne1	Cyclin E1; Belongs to the cyclin family. (508 aa)
	LOC101477005	Cyclin A2; Belongs to the cyclin family. (434 aa)
	arid3b	Uncharacterized protein. (609 aa)
	e2f7	E2F transcription factor 7. (790 aa)
	LOC101470307	Cyclin E2; Belongs to the cyclin family. (391 aa)
	cdkn1b	Cyclin-dependent kinase inhibitor 1Bb. (184 aa)
	LOC101482158	AT rich interactive domain 3C (BRIGHT-like). (543 aa)
	cdk2	Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (298 aa)
	ENSMZEP00005031506	Protein kinase domain-containing protein. (424 aa)
	ccna1	Cyclin A1; Belongs to the cyclin family. (398 aa)
	CCNE2	Cyclin E2; Belongs to the cyclin family. (411 aa)
	ENSMZEP00005038006	AT rich interactive domain 3B (BRIGHT-like). (549 aa)
	arid3a	AT rich interactive domain 3A (BRIGHT-like). (555 aa)
	e2f8	E2F transcription factor 8. (886 aa)
	LOC101467117	Uncharacterized protein. (181 aa)
	LOC101476359	Cyclin-dependent kinase inhibitor 1Cb. (208 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCNE2	ENSMZEP00005031506	ENSMZEP00005034958	ENSMZEP00005031506	Cyclin E2; Belongs to the cyclin family.	Protein kinase domain-containing protein.	0.798
CCNE2	LOC101467117	ENSMZEP00005034958	ENSMZEP00005016093	Cyclin E2; Belongs to the cyclin family.	Uncharacterized protein.	0.979
CCNE2	LOC101470307	ENSMZEP00005034958	ENSMZEP00005011789	Cyclin E2; Belongs to the cyclin family.	Cyclin E2; Belongs to the cyclin family.	0.904
CCNE2	LOC101474553	ENSMZEP00005034958	ENSMZEP00005014624	Cyclin E2; Belongs to the cyclin family.	Cyclin-dependent kinase inhibitor 1A.	0.979
CCNE2	LOC101476359	ENSMZEP00005034958	ENSMZEP00005014839	Cyclin E2; Belongs to the cyclin family.	Cyclin-dependent kinase inhibitor 1Cb.	0.979
CCNE2	LOC101477005	ENSMZEP00005034958	ENSMZEP00005003277	Cyclin E2; Belongs to the cyclin family.	Cyclin A2; Belongs to the cyclin family.	0.766
CCNE2	ccna1	ENSMZEP00005034958	ENSMZEP00005032889	Cyclin E2; Belongs to the cyclin family.	Cyclin A1; Belongs to the cyclin family.	0.766
CCNE2	ccne1	ENSMZEP00005034958	ENSMZEP00005002634	Cyclin E2; Belongs to the cyclin family.	Cyclin E1; Belongs to the cyclin family.	0.908
CCNE2	cdk2	ENSMZEP00005034958	ENSMZEP00005030012	Cyclin E2; Belongs to the cyclin family.	Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.	0.978
CCNE2	cdkn1b	ENSMZEP00005034958	ENSMZEP00005013507	Cyclin E2; Belongs to the cyclin family.	Cyclin-dependent kinase inhibitor 1Bb.	0.979
ENSMZEP00005031506	CCNE2	ENSMZEP00005031506	ENSMZEP00005034958	Protein kinase domain-containing protein.	Cyclin E2; Belongs to the cyclin family.	0.798
ENSMZEP00005031506	LOC101467117	ENSMZEP00005031506	ENSMZEP00005016093	Protein kinase domain-containing protein.	Uncharacterized protein.	0.619
ENSMZEP00005031506	LOC101470307	ENSMZEP00005031506	ENSMZEP00005011789	Protein kinase domain-containing protein.	Cyclin E2; Belongs to the cyclin family.	0.798
ENSMZEP00005031506	LOC101474553	ENSMZEP00005031506	ENSMZEP00005014624	Protein kinase domain-containing protein.	Cyclin-dependent kinase inhibitor 1A.	0.732
ENSMZEP00005031506	LOC101476359	ENSMZEP00005031506	ENSMZEP00005014839	Protein kinase domain-containing protein.	Cyclin-dependent kinase inhibitor 1Cb.	0.660
ENSMZEP00005031506	LOC101477005	ENSMZEP00005031506	ENSMZEP00005003277	Protein kinase domain-containing protein.	Cyclin A2; Belongs to the cyclin family.	0.916
ENSMZEP00005031506	ccna1	ENSMZEP00005031506	ENSMZEP00005032889	Protein kinase domain-containing protein.	Cyclin A1; Belongs to the cyclin family.	0.926
ENSMZEP00005031506	ccne1	ENSMZEP00005031506	ENSMZEP00005002634	Protein kinase domain-containing protein.	Cyclin E1; Belongs to the cyclin family.	0.870
ENSMZEP00005031506	cdkn1b	ENSMZEP00005031506	ENSMZEP00005013507	Protein kinase domain-containing protein.	Cyclin-dependent kinase inhibitor 1Bb.	0.637
LOC101467117	CCNE2	ENSMZEP00005016093	ENSMZEP00005034958	Uncharacterized protein.	Cyclin E2; Belongs to the cyclin family.	0.979