109 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB17	Uncharacterized protein. (227 aa)
	rab35	RAB35, member RAS oncogene family b. (201 aa)
	RAB9A	RAB9A, member RAS oncogene family. (202 aa)
	LOC101471294	RAB40c, member RAS oncogene family. (279 aa)
	LOC101471556	RAB38c, member of RAS oncogene family. (225 aa)
	LOC101473432	Si:dkey-16l2.16. (224 aa)
	LOC101479293	Uncharacterized protein. (698 aa)
	LOC101465588	RAB3D, member RAS oncogene family, b. (222 aa)
	LOC101478210	Uncharacterized protein. (215 aa)
	LOC101473034	RAB33B, member RAS oncogene family a. (261 aa)
	LOC101472377	Uncharacterized protein. (206 aa)
	ENSMZEP00005000927	Si:ch211-247i17.1. (85 aa)
	rab27a	RAB27A, member RAS oncogene family. (220 aa)
	LOC101487884	RAB32b, member RAS oncogene family. (218 aa)
	LOC101464831	RAB40B, member RAS oncogene family. (285 aa)
	rab26	Uncharacterized protein. (252 aa)
	LOC101479484	RAB42, member RAS oncogene family a. (265 aa)
	dnajc27	DnaJ (Hsp40) homolog, subfamily C, member 27. (273 aa)
	LOC101481294	Uncharacterized protein. (241 aa)
	garem1	GRB2 associated, regulator of MAPK1. (865 aa)
	rab4a	RAB4a, member RAS oncogene family. (213 aa)
	LOC101464763	RAB7a, member RAS oncogene family. (207 aa)
	LOC101479629	Uncharacterized protein. (252 aa)
	LOC101480206	RAB11B, member RAS oncogene family, a. (218 aa)
	LOC101469766	Uncharacterized protein. (208 aa)
	rab2a	RAB2A, member RAS oncogene family. (222 aa)
	LOC106674773	Protein tyrosine phosphatase 4A2b. (171 aa)
	LOC101486296	Si:dkey-13a21.4. (206 aa)
	rab24	RAB24, member RAS oncogene family. (204 aa)
	LOC101484730	RAB15, member RAS oncogene family. (211 aa)
	LOC101468851	Uncharacterized protein. (210 aa)
	LOC101469527	Uncharacterized protein. (207 aa)
	LOC101478491	ZRAB1B, member RAS oncogene family a. (201 aa)
	rab8a	RAB8A, member RAS oncogene family. (205 aa)
	RAB28	RAB28, member RAS oncogene family. (222 aa)
	RAB40C	RAB40C, member RAS oncogene family. (292 aa)
	LOC101478866	RAB6B, member RAS oncogene family a. (208 aa)
	LOC101475770	Uncharacterized protein. (228 aa)
	rab34	RAB34, member RAS oncogene family a. (266 aa)
	LOC101469236	RAB18B, member RAS oncogene family. (205 aa)
	zhx2	Zinc fingers and homeoboxes 2a. (901 aa)
	LOC101482707	Protein tyrosine phosphatase 4A2a. (168 aa)
	LOC101478696	Uncharacterized protein. (250 aa)
	rab3c	RAB3C, member RAS oncogene family. (242 aa)
	LOC101482981	Uncharacterized protein. (211 aa)
	rab23	RAB23, member RAS oncogene family. (235 aa)
	LOC101483604	RAB33A, member RAS oncogene family. (280 aa)
	LOC101475825	RAB25, member RAS oncogene family a. (210 aa)
	LOC101476881	RAB5A, member RAS oncogene family, a. (216 aa)
	LOC101463638	RAB3B, member RAS oncogene family. (218 aa)
	rab10	RAB10, member RAS oncogene family. (193 aa)
	rasef	RAS and EF-hand domain containing. (589 aa)
	Rasef	Uncharacterized protein. (111 aa)
	garem2	GRB2 associated, regulator of MAPK1-like. (724 aa)
	rab22a	RAB22A, member RAS oncogene family. (194 aa)
	rab42	Si:dkey-34d22.5. (222 aa)
	ENSMZEP00005005101	RAB, member RAS oncogene family-like 6b. (451 aa)
	LOC101485405	Uncharacterized protein. (220 aa)
	LOC101463983	Uncharacterized protein. (218 aa)
	rab15	RAB15, member RAS oncogene family. (213 aa)
	LOC101470116	Uncharacterized protein. (1038 aa)
	RAB29	RAB29, member RAS oncogene family. (207 aa)
	RAB38	RAB38, member RAS oncogene family. (212 aa)
	ptp4a1	Protein tyrosine phosphatase 4A1. (173 aa)
	LOC101482955	Protein tyrosine phosphatase 4A3b. (170 aa)
	LOC101478824	RAB6B, member RAS oncogene family. (208 aa)
	LOC101479632	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. (619 aa)
	LOC101486205	RAB34, member RAS oncogene family b. (209 aa)
	LOC101470918	Uncharacterized protein. (212 aa)
	pter	Phosphotriesterase related. (349 aa)
	LOC101474139	RAB8A, member RAS oncogene family. (206 aa)
	LOC101467184	RAB38b, member of RAS oncogene family. (223 aa)
	RAB31	RAB31, member RAS oncogene family. (194 aa)
	rab12	RAB12, member RAS oncogene family. (243 aa)
	rabggtb	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (331 aa)
	rab30	RAB30, member RAS oncogene family. (219 aa)
	LOC101467244	Uncharacterized protein. (221 aa)
	rab6a	RAB6A, member RAS oncogene family. (208 aa)
	armc5	Armadillo repeat containing 5. (814 aa)
	rab5c	RAB5C, member RAS oncogene family. (220 aa)
	LOC101478685	Multiple EGF-like-domains 8. (207 aa)
	rab20	RAB20, member RAS oncogene family. (260 aa)
	LOC101471002	Zgc:162879. (663 aa)
	ENSMZEP00005029364	Uncharacterized protein. (1020 aa)
	LOC101463598	Zgc:101559. (234 aa)
	LOC101475520	RAB5B, member RAS oncogene family. (216 aa)
	LOC101467027	Uncharacterized protein. (230 aa)
	rab39b	Uncharacterized protein. (213 aa)
	ENSMZEP00005028341	Uncharacterized protein. (219 aa)
	LOC101465912	Uncharacterized protein. (222 aa)
	rab21	RAB21, member RAS oncogene family. (216 aa)
	rabggta	Rab geranylgeranyltransferase subunit alpha. (583 aa)
	LOC101478404	RAB, member of RAS oncogene family-like 2. (216 aa)
	rab14	Uncharacterized protein. (215 aa)
	ptar1	Protein prenyltransferase alpha subunit repeat containing 1. (468 aa)
	LOC101467870	Uncharacterized protein. (288 aa)
	rab32	RAB32a, member RAS oncogene family. (213 aa)
	LOC101465260	RAB25, member RAS oncogene family b. (207 aa)
	RAB19	RAB19, member RAS oncogene family. (216 aa)
	LOC101477525	RAB18A, member RAS oncogene family. (204 aa)
	LOC101468935	RAB11a, member RAS oncogene family. (215 aa)
	rab3a	RAB3A, member RAS oncogene family, b. (238 aa)
	rab4b	RAB4B, member RAS oncogene family. (244 aa)
	LOC101481330	RAB5A, member RAS oncogene family, b. (216 aa)
	LOC101485711	Uncharacterized protein. (3478 aa)
	fam189b	Si:dkey-7f3.9. (657 aa)
	rab13	Uncharacterized protein. (200 aa)
	LOC101483597	Uncharacterized protein. (202 aa)
	cgnl1	Cingulin-like 1. (1283 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005000927	LOC101479632	ENSMZEP00005000927	ENSMZEP00005033443	Si:ch211-247i17.1.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.584
ENSMZEP00005000927	rab4a	ENSMZEP00005000927	ENSMZEP00005014738	Si:ch211-247i17.1.	RAB4a, member RAS oncogene family.	0.402
ENSMZEP00005000927	rab4b	ENSMZEP00005000927	ENSMZEP00005021846	Si:ch211-247i17.1.	RAB4B, member RAS oncogene family.	0.402
ENSMZEP00005000927	rabggtb	ENSMZEP00005000927	ENSMZEP00005032586	Si:ch211-247i17.1.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.554
ENSMZEP00005005101	LOC101478404	ENSMZEP00005005101	ENSMZEP00005026499	RAB, member RAS oncogene family-like 6b.	RAB, member of RAS oncogene family-like 2.	0.482
ENSMZEP00005005101	LOC101478824	ENSMZEP00005005101	ENSMZEP00005034067	RAB, member RAS oncogene family-like 6b.	RAB6B, member RAS oncogene family.	0.443
ENSMZEP00005005101	LOC101478866	ENSMZEP00005005101	ENSMZEP00005011996	RAB, member RAS oncogene family-like 6b.	RAB6B, member RAS oncogene family a.	0.443
ENSMZEP00005005101	LOC101479632	ENSMZEP00005005101	ENSMZEP00005033443	RAB, member RAS oncogene family-like 6b.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.571
ENSMZEP00005005101	LOC101482981	ENSMZEP00005005101	ENSMZEP00005007682	RAB, member RAS oncogene family-like 6b.	Uncharacterized protein.	0.443
ENSMZEP00005005101	LOC101485711	ENSMZEP00005005101	ENSMZEP00005021329	RAB, member RAS oncogene family-like 6b.	Uncharacterized protein.	0.468
ENSMZEP00005005101	LOC101486205	ENSMZEP00005005101	ENSMZEP00005033191	RAB, member RAS oncogene family-like 6b.	RAB34, member RAS oncogene family b.	0.545
ENSMZEP00005005101	RAB31	ENSMZEP00005005101	ENSMZEP00005032648	RAB, member RAS oncogene family-like 6b.	RAB31, member RAS oncogene family.	0.413
ENSMZEP00005005101	ptar1	ENSMZEP00005005101	ENSMZEP00005024689	RAB, member RAS oncogene family-like 6b.	Protein prenyltransferase alpha subunit repeat containing 1.	0.542
ENSMZEP00005005101	rab22a	ENSMZEP00005005101	ENSMZEP00005005323	RAB, member RAS oncogene family-like 6b.	RAB22A, member RAS oncogene family.	0.413
ENSMZEP00005005101	rab34	ENSMZEP00005005101	ENSMZEP00005011072	RAB, member RAS oncogene family-like 6b.	RAB34, member RAS oncogene family a.	0.545
ENSMZEP00005005101	rab6a	ENSMZEP00005005101	ENSMZEP00005031091	RAB, member RAS oncogene family-like 6b.	RAB6A, member RAS oncogene family.	0.443
ENSMZEP00005005101	rabggta	ENSMZEP00005005101	ENSMZEP00005026877	RAB, member RAS oncogene family-like 6b.	Rab geranylgeranyltransferase subunit alpha.	0.769
ENSMZEP00005005101	rabggtb	ENSMZEP00005005101	ENSMZEP00005032586	RAB, member RAS oncogene family-like 6b.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.703
ENSMZEP00005028341	LOC101463598	ENSMZEP00005028341	ENSMZEP00005029210	Uncharacterized protein.	Zgc:101559.	0.407
ENSMZEP00005028341	LOC101465260	ENSMZEP00005028341	ENSMZEP00005023408	Uncharacterized protein.	RAB25, member RAS oncogene family b.	0.402