(13 nodes) Synaptobrevin network (Maylandia zebra)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101467164	Vesicle-associated membrane protein 1. (119 aa)
	vamp4	Vesicle-associated membrane protein 4. (153 aa)
	VAMP3	Vesicle associated membrane protein 3. (103 aa)
	ENSMZEP00005002437	V-SNARE coiled-coil homology domain-containing protein. (123 aa)
	LOC101482487	V-SNARE coiled-coil homology domain-containing protein. (104 aa)
	LOC101482957	Vesicle-associated membrane protein 8 (endobrevin). (122 aa)
	LOC101470999	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family. (219 aa)
	LOC101479873	SEC22 homolog B, vesicle trafficking protein a; Belongs to the synaptobrevin family. (215 aa)
	vamp7	Synaptobrevin-like 1; Belongs to the synaptobrevin family. (220 aa)
	ENSMZEP00005009980	Si:ch73-234b20.5. (103 aa)
	ykt6	YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family. (198 aa)
	LOC101474029	Vesicle-associated membrane protein 2. (110 aa)
	vamp1	Zgc:92912. (125 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005002437	LOC101482957	ENSMZEP00005002437	ENSMZEP00005005812	V-SNARE coiled-coil homology domain-containing protein.	Vesicle-associated membrane protein 8 (endobrevin).	0.571
ENSMZEP00005002437	vamp7	ENSMZEP00005002437	ENSMZEP00005008705	V-SNARE coiled-coil homology domain-containing protein.	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	0.569
ENSMZEP00005002437	ykt6	ENSMZEP00005002437	ENSMZEP00005014262	V-SNARE coiled-coil homology domain-containing protein.	YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.	0.540
ENSMZEP00005009980	LOC101467164	ENSMZEP00005009980	ENSMZEP00005002621	Si:ch73-234b20.5.	Vesicle-associated membrane protein 1.	0.785
ENSMZEP00005009980	LOC101474029	ENSMZEP00005009980	ENSMZEP00005018349	Si:ch73-234b20.5.	Vesicle-associated membrane protein 2.	0.785
ENSMZEP00005009980	LOC101482957	ENSMZEP00005009980	ENSMZEP00005005812	Si:ch73-234b20.5.	Vesicle-associated membrane protein 8 (endobrevin).	0.959
ENSMZEP00005009980	VAMP3	ENSMZEP00005009980	ENSMZEP00005000096	Si:ch73-234b20.5.	Vesicle associated membrane protein 3.	0.638
ENSMZEP00005009980	vamp1	ENSMZEP00005009980	ENSMZEP00005023601	Si:ch73-234b20.5.	Zgc:92912.	0.785
ENSMZEP00005009980	vamp7	ENSMZEP00005009980	ENSMZEP00005008705	Si:ch73-234b20.5.	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	0.696
ENSMZEP00005009980	ykt6	ENSMZEP00005009980	ENSMZEP00005014262	Si:ch73-234b20.5.	YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.	0.632
LOC101467164	ENSMZEP00005009980	ENSMZEP00005002621	ENSMZEP00005009980	Vesicle-associated membrane protein 1.	Si:ch73-234b20.5.	0.785
LOC101467164	LOC101482957	ENSMZEP00005002621	ENSMZEP00005005812	Vesicle-associated membrane protein 1.	Vesicle-associated membrane protein 8 (endobrevin).	0.520
LOC101467164	VAMP3	ENSMZEP00005002621	ENSMZEP00005000096	Vesicle-associated membrane protein 1.	Vesicle associated membrane protein 3.	0.798
LOC101467164	vamp4	ENSMZEP00005002621	ENSMZEP00005026289	Vesicle-associated membrane protein 1.	Vesicle-associated membrane protein 4.	0.786
LOC101467164	vamp7	ENSMZEP00005002621	ENSMZEP00005008705	Vesicle-associated membrane protein 1.	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	0.654
LOC101467164	ykt6	ENSMZEP00005002621	ENSMZEP00005014262	Vesicle-associated membrane protein 1.	YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.	0.551
LOC101470999	LOC101479873	ENSMZEP00005008034	ENSMZEP00005008578	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.	SEC22 homolog B, vesicle trafficking protein a; Belongs to the synaptobrevin family.	0.901
LOC101470999	LOC101482957	ENSMZEP00005008034	ENSMZEP00005005812	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.	Vesicle-associated membrane protein 8 (endobrevin).	0.426
LOC101470999	vamp7	ENSMZEP00005008034	ENSMZEP00005008705	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	0.427
LOC101470999	ykt6	ENSMZEP00005008034	ENSMZEP00005014262	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.	YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.	0.944