40 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	osr2	Odd-skipped related transciption factor 2. (309 aa)
	msx1	Muscle segment homeobox 1a. (283 aa)
	cacnb2	Calcium channel, voltage-dependent, beta 2a. (712 aa)
	pitx2	Homeobox protein. (313 aa)
	lgr4	Leucine-rich repeat containing G protein-coupled receptor 4. (978 aa)
	LOC101468345	Bone morphogenetic protein 10. (480 aa)
	bmp4	Bone morphogenetic protein 4. (403 aa)
	LOC101464051	Axin 2 (conductin, axil). (841 aa)
	hopx	HOP homeobox. (75 aa)
	dmbx1	Diencephalon/mesencephalon homeobox 1a. (394 aa)
	bmpr1a	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (529 aa)
	dlx1	Distal-less homeobox 1a. (203 aa)
	gad1	Glutamate decarboxylase 1a. (591 aa)
	LOC101483038	SRY-box transcription factor 10. (478 aa)
	foxa2	Forkhead box A2. (413 aa)
	barx1	BARX homeobox 1. (243 aa)
	sp7	Sp7 transcription factor. (461 aa)
	gli1	GLI family zinc finger 1. (1468 aa)
	dlx6	Distal-less homeobox 6a. (246 aa)
	dlx5	Distal-less homeobox 5a. (285 aa)
	SOX14	SRY-box transcription factor 14. (238 aa)
	CALB2	Calbindin 2a. (271 aa)
	runx2	Runt-related transcription factor. (463 aa)
	edar	Ectodysplasin A receptor. (473 aa)
	AXIN2	Axin 2. (793 aa)
	fgf10	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (201 aa)
	fst	Follistatin a. (348 aa)
	barx2	BARX homeobox 2. (291 aa)
	erbb2	Receptor protein-tyrosine kinase. (1310 aa)
	pax9	Paired box 9. (342 aa)
	calu	Uncharacterized protein. (315 aa)
	Sox2	SRY-box transcription factor 2. (240 aa)
	celsr1	Cadherin EGF LAG seven-pass G-type receptor 1a; Belongs to the G-protein coupled receptor 2 family. (3069 aa)
	shox2	Short stature homeobox 2. (301 aa)
	six3	SIX homeobox 3a. (294 aa)
	bmp6	Bone morphogenetic protein 6. (428 aa)
	klf4	Kruppel-like factor 4. (430 aa)
	sema3e	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family. (731 aa)
	shh	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (415 aa)
	cdon	Cell adhesion associated, oncogene regulated. (1122 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CALB2	dlx1	ENSMZEP00005013886	ENSMZEP00005006962	Calbindin 2a.	Distal-less homeobox 1a.	0.414
LOC101468345	bmpr1a	ENSMZEP00005002147	ENSMZEP00005005858	Bone morphogenetic protein 10.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.578
LOC101483038	msx1	ENSMZEP00005007439	ENSMZEP00005036081	SRY-box transcription factor 10.	Muscle segment homeobox 1a.	0.414
LOC101483038	runx2	ENSMZEP00005007439	ENSMZEP00005013927	SRY-box transcription factor 10.	Runt-related transcription factor.	0.557
LOC101483038	shh	ENSMZEP00005007439	ENSMZEP00005029643	SRY-box transcription factor 10.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.454
SOX14	shox2	ENSMZEP00005012755	ENSMZEP00005021300	SRY-box transcription factor 14.	Short stature homeobox 2.	0.460
barx1	dlx1	ENSMZEP00005008803	ENSMZEP00005006962	BARX homeobox 1.	Distal-less homeobox 1a.	0.414
barx1	msx1	ENSMZEP00005008803	ENSMZEP00005036081	BARX homeobox 1.	Muscle segment homeobox 1a.	0.498
barx1	pax9	ENSMZEP00005008803	ENSMZEP00005019717	BARX homeobox 1.	Paired box 9.	0.501
bmp4	bmp6	ENSMZEP00005002692	ENSMZEP00005023102	Bone morphogenetic protein 4.	Bone morphogenetic protein 6.	0.627
bmp4	bmpr1a	ENSMZEP00005002692	ENSMZEP00005005858	Bone morphogenetic protein 4.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.987
bmp4	dlx1	ENSMZEP00005002692	ENSMZEP00005006962	Bone morphogenetic protein 4.	Distal-less homeobox 1a.	0.440
bmp4	dlx5	ENSMZEP00005002692	ENSMZEP00005011971	Bone morphogenetic protein 4.	Distal-less homeobox 5a.	0.518
bmp4	dlx6	ENSMZEP00005002692	ENSMZEP00005011965	Bone morphogenetic protein 4.	Distal-less homeobox 6a.	0.487
bmp4	edar	ENSMZEP00005002692	ENSMZEP00005013994	Bone morphogenetic protein 4.	Ectodysplasin A receptor.	0.700
bmp4	fgf10	ENSMZEP00005002692	ENSMZEP00005016377	Bone morphogenetic protein 4.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.563
bmp4	fst	ENSMZEP00005002692	ENSMZEP00005016502	Bone morphogenetic protein 4.	Follistatin a.	0.552
bmp4	msx1	ENSMZEP00005002692	ENSMZEP00005036081	Bone morphogenetic protein 4.	Muscle segment homeobox 1a.	0.576
bmp4	pax9	ENSMZEP00005002692	ENSMZEP00005019717	Bone morphogenetic protein 4.	Paired box 9.	0.422
bmp4	pitx2	ENSMZEP00005002692	ENSMZEP00005001572	Bone morphogenetic protein 4.	Homeobox protein.	0.571