25 items (Maylandia zebra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tbx5	Uncharacterized protein. (529 aa)
	LOC101473163	T-box transcription factor Ta. (425 aa)
	LOC101471115	Uncharacterized protein. (333 aa)
	tbx3	T-box transcription factor 3a. (710 aa)
	LOC101474152	T-box transcription factor 5a. (525 aa)
	tbx15	T-box transcription factor 15. (608 aa)
	LOC101480282	Eomesodermin homolog a. (646 aa)
	tbxt	T-box transcription factor Tb. (436 aa)
	ENSMZEP00005036941	Uncharacterized protein. (406 aa)
	LOC101483795	T-box transcription factor 2a. (645 aa)
	tbx21	T-box transcription factor 21. (621 aa)
	tbr1	T-box brain transcription factor 1b. (662 aa)
	LOC101466010	T-box transcription factor 16. (465 aa)
	TBX22	T-box transcription factor 22. (506 aa)
	LOC101476499	Eomesodermin homolog b. (603 aa)
	ENSMZEP00005007667	Uncharacterized protein. (321 aa)
	ENSMZEP00005004331	T-box transcription factor 3b. (380 aa)
	tbx4	T-box transcription factor 4. (534 aa)
	TBX2	T-box transcription factor 2. (684 aa)
	tbx1	T-box transcription factor 1. (501 aa)
	LOC101487360	T-box transcription factor 6. (803 aa)
	ENSMZEP00005016260	Uncharacterized protein. (382 aa)
	tbx20	T-box transcription factor 20. (437 aa)
	LOC101486361	BHLH domain-containing protein. (2191 aa)
	LOC101479578	T-box transcription factor 18. (511 aa)

Your Current Organism:

Maylandia zebra

NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMZEP00005016260	LOC101476499	ENSMZEP00005016260	ENSMZEP00005008232	Uncharacterized protein.	Eomesodermin homolog b.	0.469
ENSMZEP00005016260	LOC101480282	ENSMZEP00005016260	ENSMZEP00005035422	Uncharacterized protein.	Eomesodermin homolog a.	0.518
ENSMZEP00005016260	tbr1	ENSMZEP00005016260	ENSMZEP00005009620	Uncharacterized protein.	T-box brain transcription factor 1b.	0.518
LOC101473163	LOC101476499	ENSMZEP00005022431	ENSMZEP00005008232	T-box transcription factor Ta.	Eomesodermin homolog b.	0.496
LOC101473163	LOC101480282	ENSMZEP00005022431	ENSMZEP00005035422	T-box transcription factor Ta.	Eomesodermin homolog a.	0.538
LOC101473163	tbr1	ENSMZEP00005022431	ENSMZEP00005009620	T-box transcription factor Ta.	T-box brain transcription factor 1b.	0.518
LOC101476499	ENSMZEP00005016260	ENSMZEP00005008232	ENSMZEP00005016260	Eomesodermin homolog b.	Uncharacterized protein.	0.469
LOC101476499	LOC101473163	ENSMZEP00005008232	ENSMZEP00005022431	Eomesodermin homolog b.	T-box transcription factor Ta.	0.496
LOC101476499	tbx21	ENSMZEP00005008232	ENSMZEP00005010491	Eomesodermin homolog b.	T-box transcription factor 21.	0.492
LOC101476499	tbxt	ENSMZEP00005008232	ENSMZEP00005010799	Eomesodermin homolog b.	T-box transcription factor Tb.	0.496
LOC101480282	ENSMZEP00005016260	ENSMZEP00005035422	ENSMZEP00005016260	Eomesodermin homolog a.	Uncharacterized protein.	0.518
LOC101480282	LOC101473163	ENSMZEP00005035422	ENSMZEP00005022431	Eomesodermin homolog a.	T-box transcription factor Ta.	0.538
LOC101480282	tbx21	ENSMZEP00005035422	ENSMZEP00005010491	Eomesodermin homolog a.	T-box transcription factor 21.	0.495
LOC101480282	tbxt	ENSMZEP00005035422	ENSMZEP00005010799	Eomesodermin homolog a.	T-box transcription factor Tb.	0.518
tbr1	ENSMZEP00005016260	ENSMZEP00005009620	ENSMZEP00005016260	T-box brain transcription factor 1b.	Uncharacterized protein.	0.518
tbr1	LOC101473163	ENSMZEP00005009620	ENSMZEP00005022431	T-box brain transcription factor 1b.	T-box transcription factor Ta.	0.518
tbr1	tbx21	ENSMZEP00005009620	ENSMZEP00005010491	T-box brain transcription factor 1b.	T-box transcription factor 21.	0.484
tbr1	tbxt	ENSMZEP00005009620	ENSMZEP00005010799	T-box brain transcription factor 1b.	T-box transcription factor Tb.	0.518
tbx21	LOC101476499	ENSMZEP00005010491	ENSMZEP00005008232	T-box transcription factor 21.	Eomesodermin homolog b.	0.492
tbx21	LOC101480282	ENSMZEP00005010491	ENSMZEP00005035422	T-box transcription factor 21.	Eomesodermin homolog a.	0.495