(35 nodes) RNA polymerase network (Pneumocystis murina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PNEG_03315	Uncharacterized protein. (159 aa)
	PNEG_00275	Uncharacterized protein. (267 aa)
	PNEG_00386	RPOLD domain-containing protein. (349 aa)
	PNEG_00078	DNA-directed RNA polymerase II subunit rpb7. (171 aa)
	PNEG_02329	Uncharacterized protein. (211 aa)
	PNEG_02190	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1671 aa)
	PNEG_02400	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1163 aa)
	PNEG_01965	SAP30_Sin3_bdg domain-containing protein. (117 aa)
	PNEG_01931	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1165 aa)
	PNEG_01810	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1403 aa)
	PNEG_01676	Uncharacterized protein. (229 aa)
	PNEG_01059	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1218 aa)
	PNEG_00871	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1666 aa)
	PNEG_00944	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (66 aa)
	PNEG_00440	Transcription elongation factor S-II. (284 aa)
	PNEG_02645	RNA_pol_L_2 domain-containing protein. (122 aa)
	PNEG_02430	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (310 aa)
	PNEG_02555	TFIIS central domain-containing protein. (794 aa)
	PNEG_01934	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (588 aa)
	PNEG_00542	RPOLD domain-containing protein. (295 aa)
	PNEG_00189	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (110 aa)
	PNEG_03469	DNA-directed RNA polymerase I and III subunit RPAC2. (121 aa)
	PNEG_03500	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (119 aa)
	PNEG_02817	RPOL4c domain-containing protein. (148 aa)
	PNEG_02111	DNA-directed RNA polymerase I, II, and III subunit RPABC4. (71 aa)
	PNEG_00305	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (125 aa)
	PNEG_03577	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (453 aa)
	PNEG_01660	Diphthamide biosynthesis protein 3. (79 aa)
	PNEG_01631	Uncharacterized protein. (425 aa)
	PNEG_01197	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (109 aa)
	PNEG_02828	Uncharacterized protein. (414 aa)
	PNEG_01254	Uncharacterized protein. (186 aa)
	PNEG_01352	Uncharacterized protein. (409 aa)
	PNEG_02581	Uncharacterized protein. (443 aa)
	PNEG_00931	DNA-directed RNA polymerase. (192 aa)

Your Current Organism:

Pneumocystis murina

NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PNEG_00078	PNEG_00189	M7PMD8	M7NWW6	DNA-directed RNA polymerase II subunit rpb7.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
PNEG_00078	PNEG_00305	M7PMD8	M7PBN8	DNA-directed RNA polymerase II subunit rpb7.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
PNEG_00078	PNEG_00386	M7PMD8	M7PLN2	DNA-directed RNA polymerase II subunit rpb7.	RPOLD domain-containing protein.	0.951
PNEG_00078	PNEG_00440	M7PMD8	M7NVT6	DNA-directed RNA polymerase II subunit rpb7.	Transcription elongation factor S-II.	0.982
PNEG_00078	PNEG_00542	M7PMD8	M7NWK2	DNA-directed RNA polymerase II subunit rpb7.	RPOLD domain-containing protein.	0.999
PNEG_00078	PNEG_00871	M7PMD8	M7NUD9	DNA-directed RNA polymerase II subunit rpb7.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PNEG_00078	PNEG_00944	M7PMD8	M7NUN3	DNA-directed RNA polymerase II subunit rpb7.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.999
PNEG_00078	PNEG_01059	M7PMD8	M7NUD7	DNA-directed RNA polymerase II subunit rpb7.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PNEG_00078	PNEG_01197	M7PMD8	M7PJ52	DNA-directed RNA polymerase II subunit rpb7.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.888
PNEG_00078	PNEG_01676	M7PMD8	M7NS26	DNA-directed RNA polymerase II subunit rpb7.	Uncharacterized protein.	0.699
PNEG_00078	PNEG_01931	M7PMD8	M7NRL0	DNA-directed RNA polymerase II subunit rpb7.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.873
PNEG_00078	PNEG_01965	M7PMD8	M7NRB5	DNA-directed RNA polymerase II subunit rpb7.	SAP30_Sin3_bdg domain-containing protein.	0.852
PNEG_00078	PNEG_02111	M7PMD8	M7P6L5	DNA-directed RNA polymerase II subunit rpb7.	DNA-directed RNA polymerase I, II, and III subunit RPABC4.	0.999
PNEG_00078	PNEG_02329	M7PMD8	M7NQ44	DNA-directed RNA polymerase II subunit rpb7.	Uncharacterized protein.	0.999
PNEG_00078	PNEG_02400	M7PMD8	M7NQS3	DNA-directed RNA polymerase II subunit rpb7.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.873
PNEG_00078	PNEG_02555	M7PMD8	M7PFI4	DNA-directed RNA polymerase II subunit rpb7.	TFIIS central domain-containing protein.	0.804
PNEG_00078	PNEG_02645	M7PMD8	M7PEH0	DNA-directed RNA polymerase II subunit rpb7.	RNA_pol_L_2 domain-containing protein.	0.999
PNEG_00078	PNEG_02817	M7PMD8	M7P589	DNA-directed RNA polymerase II subunit rpb7.	RPOL4c domain-containing protein.	0.999
PNEG_00078	PNEG_03315	M7PMD8	M7PDF3	DNA-directed RNA polymerase II subunit rpb7.	Uncharacterized protein.	0.999
PNEG_00078	PNEG_03469	M7PMD8	M7P2B5	DNA-directed RNA polymerase II subunit rpb7.	DNA-directed RNA polymerase I and III subunit RPAC2.	0.498