(7 nodes) HTH APSES-type DNA-binding domain superfamily network (Tetrapisispora phaffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TPHA0C03310	HTH APSES-type domain-containing protein. (890 aa)
	TPHA0D01580	HTH APSES-type domain-containing protein. (727 aa)
	TPHA0B00880	Uncharacterized protein. (799 aa)
	TPHA0E00750	Uncharacterized protein. (1077 aa)
	TPHA0I02430	HTH APSES-type domain-containing protein. (310 aa)
	TPHA0K00750	Uncharacterized protein. (857 aa)
	TPHA0N01350	HTH APSES-type domain-containing protein. (365 aa)

Your Current Organism:

Tetrapisispora phaffii

NCBI taxonomy Id: 1071381
Other names: T. phaffii CBS 4417, Tetrapisispora phaffii CBS 4417

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TPHA0B00880	TPHA0E00750	G8BQG3	G8BTE2	Uncharacterized protein.	Uncharacterized protein.	0.808
TPHA0B00880	TPHA0K00750	G8BQG3	G8BZ81	Uncharacterized protein.	Uncharacterized protein.	0.839
TPHA0E00750	TPHA0B00880	G8BTE2	G8BQG3	Uncharacterized protein.	Uncharacterized protein.	0.808
TPHA0E00750	TPHA0K00750	G8BTE2	G8BZ81	Uncharacterized protein.	Uncharacterized protein.	0.900
TPHA0I02430	TPHA0N01350	G8BXW8	G8C188	HTH APSES-type domain-containing protein.	HTH APSES-type domain-containing protein.	0.912
TPHA0K00750	TPHA0B00880	G8BZ81	G8BQG3	Uncharacterized protein.	Uncharacterized protein.	0.839
TPHA0K00750	TPHA0E00750	G8BZ81	G8BTE2	Uncharacterized protein.	Uncharacterized protein.	0.900
TPHA0N01350	TPHA0I02430	G8C188	G8BXW8	HTH APSES-type domain-containing protein.	HTH APSES-type domain-containing protein.	0.912