9 items (Kazachstania naganishii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KNAG0G02430	CULLIN_2 domain-containing protein; Belongs to the cullin family. (797 aa)
	KNAG0F01340	Uncharacterized protein. (1660 aa)
	KNAG0H00160	Uncharacterized protein. (780 aa)
	KNAG0B02240	TPR_REGION domain-containing protein. (739 aa)
	KNAG0E00680	TPR_REGION domain-containing protein. (639 aa)
	KNAG0G02630	ANAPC5 domain-containing protein. (638 aa)
	KNAG0H03190	ANAPC4 domain-containing protein. (622 aa)
	KNAG0I00250	DOC domain-containing protein. (257 aa)
	KNAG0J01250	RING-type domain-containing protein. (202 aa)

Your Current Organism:

Kazachstania naganishii

NCBI taxonomy Id: 1071383
Other names: K. naganishii CBS 8797, Kazachstania naganishii CBS 8797

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KNAG0B02240	KNAG0E00680	J7S4M3	J7S7H0	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.999
KNAG0B02240	KNAG0F01340	J7S4M3	J7RZX3	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.999
KNAG0B02240	KNAG0G02430	J7S4M3	J7R8V1	TPR_REGION domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
KNAG0B02240	KNAG0G02630	J7S4M3	J7S832	TPR_REGION domain-containing protein.	ANAPC5 domain-containing protein.	0.999
KNAG0B02240	KNAG0H00160	J7S4M3	J7S1F2	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.999
KNAG0B02240	KNAG0H03190	J7S4M3	J7S8T7	TPR_REGION domain-containing protein.	ANAPC4 domain-containing protein.	0.999
KNAG0B02240	KNAG0I00250	J7S4M3	J7S9Z3	TPR_REGION domain-containing protein.	DOC domain-containing protein.	0.999
KNAG0B02240	KNAG0J01250	J7S4M3	J7SAI8	TPR_REGION domain-containing protein.	RING-type domain-containing protein.	0.999
KNAG0E00680	KNAG0B02240	J7S7H0	J7S4M3	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.999
KNAG0E00680	KNAG0F01340	J7S7H0	J7RZX3	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.999
KNAG0E00680	KNAG0G02430	J7S7H0	J7R8V1	TPR_REGION domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
KNAG0E00680	KNAG0G02630	J7S7H0	J7S832	TPR_REGION domain-containing protein.	ANAPC5 domain-containing protein.	0.999
KNAG0E00680	KNAG0H00160	J7S7H0	J7S1F2	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.999
KNAG0E00680	KNAG0H03190	J7S7H0	J7S8T7	TPR_REGION domain-containing protein.	ANAPC4 domain-containing protein.	0.999
KNAG0E00680	KNAG0I00250	J7S7H0	J7S9Z3	TPR_REGION domain-containing protein.	DOC domain-containing protein.	0.999
KNAG0E00680	KNAG0J01250	J7S7H0	J7SAI8	TPR_REGION domain-containing protein.	RING-type domain-containing protein.	0.999
KNAG0F01340	KNAG0B02240	J7RZX3	J7S4M3	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.999
KNAG0F01340	KNAG0E00680	J7RZX3	J7S7H0	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.999
KNAG0F01340	KNAG0G02430	J7RZX3	J7R8V1	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
KNAG0F01340	KNAG0G02630	J7RZX3	J7S832	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.999