(11 nodes) ER to Golgi transport vesicle membrane network (Kazachstania naganishii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KNAG0D01000	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (190 aa)
	KNAG0H02200	Uncharacterized protein. (932 aa)
	KNAG0E01910	Uncharacterized protein. (900 aa)
	KNAG0D04340	Uncharacterized protein. (2220 aa)
	KNAG0B02670	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (303 aa)
	KNAG0F03920	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (769 aa)
	KNAG0F02840	Uncharacterized protein; Belongs to the synaptobrevin family. (214 aa)
	KNAG0B00990	Vacuolar ATPase assembly integral membrane protein VMA21; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family. (75 aa)
	KNAG0B04350	Uncharacterized protein. (966 aa)
	KNAG0L00140	Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex. (235 aa)
	KNAG0B02800	WD_REPEATS_REGION domain-containing protein. (1307 aa)

Your Current Organism:

Kazachstania naganishii

NCBI taxonomy Id: 1071383
Other names: K. naganishii CBS 8797, Kazachstania naganishii CBS 8797

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KNAG0B02670	KNAG0B02800	J7R1L6	J7RV07	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	WD_REPEATS_REGION domain-containing protein.	0.999
KNAG0B02670	KNAG0B04350	J7R1L6	J7S3R8	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.988
KNAG0B02670	KNAG0D01000	J7R1L6	J7RXN0	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.940
KNAG0B02670	KNAG0D04340	J7R1L6	J7R5P7	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.566
KNAG0B02670	KNAG0E01910	J7R1L6	J7RLP3	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.954
KNAG0B02670	KNAG0F02840	J7R1L6	J7S8J2	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.847
KNAG0B02670	KNAG0F03920	J7R1L6	J7S8R8	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.994
KNAG0B02670	KNAG0H02200	J7R1L6	J7RPJ2	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.954
KNAG0B02670	KNAG0L00140	J7R1L6	J7S3I1	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex.	0.741
KNAG0B02800	KNAG0B02670	J7RV07	J7R1L6	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.999
KNAG0B02800	KNAG0B04350	J7RV07	J7S3R8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.956
KNAG0B02800	KNAG0D01000	J7RV07	J7RXN0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.983
KNAG0B02800	KNAG0D04340	J7RV07	J7R5P7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.492
KNAG0B02800	KNAG0E01910	J7RV07	J7RLP3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.923
KNAG0B02800	KNAG0F02840	J7RV07	J7S8J2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.846
KNAG0B02800	KNAG0F03920	J7RV07	J7S8R8	WD_REPEATS_REGION domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.997
KNAG0B02800	KNAG0H02200	J7RV07	J7RPJ2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.923
KNAG0B02800	KNAG0L00140	J7RV07	J7S3I1	WD_REPEATS_REGION domain-containing protein.	Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex.	0.672
KNAG0B04350	KNAG0B02670	J7S3R8	J7R1L6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.988
KNAG0B04350	KNAG0B02800	J7S3R8	J7RV07	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.956