12 items (Kazachstania naganishii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KNAG0I00250	DOC domain-containing protein. (257 aa)
	KNAG0F02420	WD_REPEATS_REGION domain-containing protein. (641 aa)
	KNAG0B03440	Ubiquitin-like domain-containing protein. (863 aa)
	KNAG0B03210	Uncharacterized protein. (329 aa)
	KNAG0A01610	WD_REPEATS_REGION domain-containing protein. (531 aa)
	KNAG0A02540	Uncharacterized protein. (401 aa)
	KNAG0B04050	UBA domain-containing protein. (673 aa)
	KNAG0B05550	WD_REPEATS_REGION domain-containing protein. (617 aa)
	KNAG0B02850	U-box domain-containing protein. (964 aa)
	KNAG0B02940	Uncharacterized protein; Belongs to the AAA ATPase family. (838 aa)
	KNAG0G02440	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. (265 aa)
	KNAG0I01790	HORMA domain-containing protein. (203 aa)

Your Current Organism:

Kazachstania naganishii

NCBI taxonomy Id: 1071383
Other names: K. naganishii CBS 8797, Kazachstania naganishii CBS 8797

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KNAG0A01610	KNAG0B03210	J7QZF4	J7RV38	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.866
KNAG0A01610	KNAG0I00250	J7QZF4	J7S9Z3	WD_REPEATS_REGION domain-containing protein.	DOC domain-containing protein.	0.946
KNAG0A01610	KNAG0I01790	J7QZF4	J7S997	WD_REPEATS_REGION domain-containing protein.	HORMA domain-containing protein.	0.943
KNAG0B02850	KNAG0B02940	J7RV10	J7S4Q9	U-box domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.983
KNAG0B02940	KNAG0B02850	J7S4Q9	J7RV10	Uncharacterized protein; Belongs to the AAA ATPase family.	U-box domain-containing protein.	0.983
KNAG0B02940	KNAG0B03440	J7S4Q9	J7S4T4	Uncharacterized protein; Belongs to the AAA ATPase family.	Ubiquitin-like domain-containing protein.	0.970
KNAG0B03210	KNAG0A01610	J7RV38	J7QZF4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.866
KNAG0B03210	KNAG0B05550	J7RV38	J7RHI2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.866
KNAG0B03210	KNAG0F02420	J7RV38	J7S058	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.964
KNAG0B03210	KNAG0I00250	J7RV38	J7S9Z3	Uncharacterized protein.	DOC domain-containing protein.	0.898
KNAG0B03210	KNAG0I01790	J7RV38	J7S997	Uncharacterized protein.	HORMA domain-containing protein.	0.998
KNAG0B03440	KNAG0B02940	J7S4T4	J7S4Q9	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.970
KNAG0B05550	KNAG0B03210	J7RHI2	J7RV38	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.866
KNAG0B05550	KNAG0F02420	J7RHI2	J7S058	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.880
KNAG0B05550	KNAG0I00250	J7RHI2	J7S9Z3	WD_REPEATS_REGION domain-containing protein.	DOC domain-containing protein.	0.968
KNAG0B05550	KNAG0I01790	J7RHI2	J7S997	WD_REPEATS_REGION domain-containing protein.	HORMA domain-containing protein.	0.991
KNAG0F02420	KNAG0B03210	J7S058	J7RV38	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.964
KNAG0F02420	KNAG0B05550	J7S058	J7RHI2	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.880
KNAG0F02420	KNAG0I00250	J7S058	J7S9Z3	WD_REPEATS_REGION domain-containing protein.	DOC domain-containing protein.	0.956
KNAG0F02420	KNAG0I01790	J7S058	J7S997	WD_REPEATS_REGION domain-containing protein.	HORMA domain-containing protein.	0.981