(25 nodes) Plasma membrane protein complex network (Basilea psittacipulmonis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIL33330.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AIL31996.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	AIL32131.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	AIL32280.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
	AIL32285.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AIL32339.1	Cbb3-type cytochrome c oxidase subunit I; CcoN; FixN; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family. (481 aa)
	AIL32368.1	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	AIL32385.1	Phosphate ABC transporter substrate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (336 aa)
	AIL32478.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
	ugpE	Glycerol-3-phosphate transporter membrane protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane. (281 aa)
	AIL32554.1	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	AIL32734.1	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	AIL32735.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	AIL32762.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	AIL32851.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (516 aa)
	AIL33032.1	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)
	AIL33192.1	NADH:ubiquinone oxidoreductase subunit M; Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
	AIL33198.1	NADH dehydrogenase; Catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the complex I 75 kDa subunit family. (761 aa)
	AIL33200.1	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	AIL33232.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	AIL33233.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	AIL33285.1	Amino acid ABC transporter permease; With GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	tatC	Twin-arginine protein translocation system subunit TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. (245 aa)
	tatA	Preprotein translocase subunit TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (71 aa)
	AIL33325.1	Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)

Your Current Organism:

Basilea psittacipulmonis

NCBI taxonomy Id: 1072685
Other names: Alcaligenaceae bacterium CIP 110308, Alcaligenaceae bacterium DSM 24701, B. psittacipulmonis DSM 24701, Basilea psittacipulmonis CIP 110308, Basilea psittacipulmonis DSM 24701

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIL31996.1	AIL32131.1	IX83_00455	IX83_01255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AIL32131.1	AIL31996.1	IX83_01255	IX83_00455	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AIL32131.1	AIL32280.1	IX83_01255	IX83_02180	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AIL32131.1	AIL32478.1	IX83_01255	IX83_03400	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AIL32131.1	AIL33032.1	IX83_01255	IX83_06645	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AIL32131.1	AIL33330.1	IX83_01255	IX83_08465	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
AIL32280.1	AIL32131.1	IX83_02180	IX83_01255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AIL32280.1	AIL33032.1	IX83_02180	IX83_06645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AIL32285.1	AIL33232.1	IX83_02210	IX83_07940	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
AIL32285.1	AIL33285.1	IX83_02210	IX83_08235	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AIL32285.1	AIL33325.1	IX83_02210	IX83_08440	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AIL32339.1	AIL33192.1	IX83_02510	IX83_07705	Cbb3-type cytochrome c oxidase subunit I; CcoN; FixN; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	NADH:ubiquinone oxidoreductase subunit M; Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
AIL32385.1	AIL32851.1	IX83_02790	IX83_05545	Phosphate ABC transporter substrate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AIL32478.1	AIL32131.1	IX83_03400	IX83_01255	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AIL32478.1	AIL33330.1	IX83_03400	IX83_08465	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AIL32734.1	AIL32735.1	IX83_04920	IX83_04925	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AIL32734.1	AIL33232.1	IX83_04920	IX83_07940	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
AIL32734.1	AIL33233.1	IX83_04920	IX83_07945	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
AIL32734.1	AIL33285.1	IX83_04920	IX83_08235	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
AIL32734.1	ugpE	IX83_04920	IX83_03755	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-3-phosphate transporter membrane protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.	0.407

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