STRINGSTRING
AIL32284.1 AIL32284.1 metN metN AIL33331.1 AIL33331.1 AIL33326.1 AIL33326.1 AIL33284.1 AIL33284.1 AIL33231.1 AIL33231.1 AIL33176.1 AIL33176.1 AIL33169.1 AIL33169.1 ruvB ruvB AIL33027.1 AIL33027.1 AIL32968.1 AIL32968.1 AIL32957.1 AIL32957.1 AIL32956.1 AIL32956.1 AIL32850.1 AIL32850.1 AIL32810.1 AIL32810.1 radA radA potA potA AIL32780.1 AIL32780.1 msbA msbA AIL32762.1 AIL32762.1 recA recA AIL32733.1 AIL32733.1 ntrC ntrC der der AIL32596.1 AIL32596.1 rho rho AIL32589.1 AIL32589.1 hslU hslU atpD atpD lolD lolD ugpC ugpC clpX clpX macB macB AIL32479.1 AIL32479.1 AIL32409.1 AIL32409.1 pstB pstB AIL32355.1 AIL32355.1 AIL32353.1 AIL32353.1 clpB clpB glnQ glnQ AIL32264.1 AIL32264.1 dnaX dnaX AIL32213.1 AIL32213.1 AIL32181.1 AIL32181.1 AIL32172.1 AIL32172.1 AIL32142.1 AIL32142.1 AIL32131.1 AIL32131.1 AIL32084.1 AIL32084.1 AIL31995.1 AIL31995.1 dnaA dnaA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AIL32284.1ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
metNMethionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (338 aa)
AIL33331.1Toluene ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
AIL33326.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
AIL33284.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
AIL33231.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
AIL33176.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)
AIL33169.1Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (1834 aa)
ruvBATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (360 aa)
AIL33027.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (600 aa)
AIL32968.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (633 aa)
AIL32957.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (587 aa)
AIL32956.1Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
AIL32850.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (576 aa)
AIL32810.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
radADNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (451 aa)
potATransporter; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (375 aa)
AIL32780.1ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1260 aa)
msbALipid transporter ATP-binding/permease; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (573 aa)
AIL32762.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
recARecombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (358 aa)
AIL32733.1Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
ntrCChemotaxis protein CheY; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (482 aa)
derGTP-binding protein Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (458 aa)
AIL32596.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (418 aa)
AIL32589.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (383 aa)
hslUATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (445 aa)
atpDATP synthase F0F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (466 aa)
lolDLipoprotein ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. (228 aa)
ugpCGlycerol-3-phosphate transporter ATP-binding subunit; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family. (366 aa)
clpXClp protease ATP-binding protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (416 aa)
macBMacrolide transporter; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. (644 aa)
AIL32479.1Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
AIL32409.1DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (461 aa)
pstBPhosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (260 aa)
AIL32355.1Recombination factor protein RarA; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)
AIL32353.1Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology. (795 aa)
clpBProtein disaggregation chaperone; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (861 aa)
glnQSimilar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
AIL32264.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
dnaXHypothetical protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (722 aa)
AIL32213.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (584 aa)
AIL32181.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
AIL32172.1Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
AIL32142.1Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)
AIL32131.1Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
AIL32084.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
AIL31995.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
dnaAHypothetical protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (467 aa)
Your Current Organism:
Basilea psittacipulmonis
NCBI taxonomy Id: 1072685
Other names: Alcaligenaceae bacterium CIP 110308, Alcaligenaceae bacterium DSM 24701, B. psittacipulmonis DSM 24701, Basilea psittacipulmonis CIP 110308, Basilea psittacipulmonis DSM 24701
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