124 items (Penicilliopsis zonata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9S6A9	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
	A0A1L9S787	Sm domain-containing protein. (92 aa)
	A0A1L9S7J4	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
	A0A1L9S811	RRM domain-containing protein. (113 aa)
	A0A1L9S818	Uncharacterized protein. (939 aa)
	A0A1L9S8E1	Uncharacterized protein. (564 aa)
	A0A1L9S8J2	Slu7 domain-containing protein. (457 aa)
	A0A1L9S989	Uncharacterized protein. (352 aa)
	A0A1L9S994	Uncharacterized protein. (839 aa)
	A0A1L9S9G6	Cwf21 domain-containing protein. (188 aa)
	A0A1L9S9L0	SNRNP27 domain-containing protein. (237 aa)
	A0A1L9S9Y2	PPIase cyclophilin-type domain-containing protein. (557 aa)
	A0A1L9SA61	Uncharacterized protein. (680 aa)
	A0A1L9SA75	Uncharacterized protein. (313 aa)
	A0A1L9SA80	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	A0A1L9SAA8	Uncharacterized protein. (291 aa)
	A0A1L9SAZ3	Uncharacterized protein. (167 aa)
	A0A1L9SB17	Uncharacterized protein. (205 aa)
	A0A1L9SBL5	Uncharacterized protein. (1396 aa)
	A0A1L9SBR4	Sm domain-containing protein. (220 aa)
	A0A1L9SBU5	Uncharacterized protein. (613 aa)
	A0A1L9SC99	PSP domain-containing protein. (557 aa)
	A0A1L9SCQ6	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (210 aa)
	A0A1L9SDE2	WD_REPEATS_REGION domain-containing protein. (1330 aa)
	A0A1L9SDN8	Uncharacterized protein. (564 aa)
	A0A1L9SE17	Uncharacterized protein. (285 aa)
	A0A1L9SE95	RRM domain-containing protein. (431 aa)
	A0A1L9SEK7	Sm domain-containing protein. (150 aa)
	A0A1L9SFE2	Uncharacterized protein. (360 aa)
	A0A1L9SFJ7	Uncharacterized protein. (611 aa)
	A0A1L9SG13	Uncharacterized protein. (296 aa)
	A0A1L9SG17	Small nuclear ribonucleoprotein G. (78 aa)
	A0A1L9SGC1	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	A0A1L9SGF6	WD_REPEATS_REGION domain-containing protein. (529 aa)
	A0A1L9SGJ9	Uncharacterized protein. (2205 aa)
	A0A1L9SGR4	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1419 aa)
	A0A1L9SGU1	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (174 aa)
	A0A1L9SGU8	Tr-type G domain-containing protein. (1006 aa)
	A0A1L9SGW1	Uncharacterized protein. (1022 aa)
	A0A1L9SH73	PWI domain-containing protein. (765 aa)
	A0A1L9SHH0	Cir_N domain-containing protein. (418 aa)
	A0A1L9SIH0	WD_REPEATS_REGION domain-containing protein. (585 aa)
	A0A1L9SIH3	Uncharacterized protein. (161 aa)
	A0A1L9SII9	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (584 aa)
	A0A1L9SIK2	Uncharacterized protein. (244 aa)
	A0A1L9SIM9	Uncharacterized protein. (311 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (122 aa)
	A0A1L9SIV2	Uncharacterized protein. (108 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (175 aa)
	A0A1L9SJ56	SF3b1 domain-containing protein. (1227 aa)
	A0A1L9SJA7	RRM domain-containing protein. (153 aa)
	A0A1L9SJM8	RRM domain-containing protein. (191 aa)
	A0A1L9SJZ8	Uncharacterized protein. (219 aa)
	A0A1L9SKI0	CPSF_A domain-containing protein. (1264 aa)
	A0A1L9SKL3	Splicing factor subunit; Belongs to the SF3B5 family. (84 aa)
	A0A1L9SKW6	F-box domain-containing protein. (606 aa)
	A0A1L9SLA5	MI domain-containing protein. (853 aa)
	A0A1L9SLE8	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (122 aa)
	A0A1L9SLJ8	WD_REPEATS_REGION domain-containing protein. (359 aa)
	A0A1L9SLK5	DUF1716 domain-containing protein. (589 aa)
	A0A1L9SLN5	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (1395 aa)
	A0A1L9SLW5	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (454 aa)
	A0A1L9SLW8	Uncharacterized protein. (399 aa)
	A0A1L9SLY5	Uncharacterized protein. (257 aa)
	A0A1L9SM60	RRM domain-containing protein. (284 aa)
	A0A1L9SMA5	Uncharacterized protein. (244 aa)
	A0A1L9SMB6	Uncharacterized protein. (253 aa)
	A0A1L9SMD3	Uncharacterized protein. (601 aa)
	A0A1L9SMI7	Uncharacterized protein. (335 aa)
	A0A1L9SNG2	Uncharacterized protein. (1243 aa)
	A0A1L9SNK9	Uncharacterized protein. (899 aa)
	A0A1L9SNT2	Uncharacterized protein. (148 aa)
	A0A1L9SNX4	Uncharacterized protein. (411 aa)
	A0A1L9SP90	Matrin-type domain-containing protein. (504 aa)
	A0A1L9SPE5	Uncharacterized protein. (284 aa)
	A0A1L9SPG4	SKIP_SNW domain-containing protein. (568 aa)
	A0A1L9SPJ2	Uncharacterized protein. (300 aa)
	A0A1L9SPQ0	CPSF_A domain-containing protein. (1220 aa)
	A0A1L9SQ35	Sde2_N_Ubi domain-containing protein. (310 aa)
	A0A1L9SQ74	Matrin-type domain-containing protein. (236 aa)
	A0A1L9SQ79	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (203 aa)
	A0A1L9SQ88	Uncharacterized protein. (258 aa)
	A0A1L9SQA8	G-patch domain-containing protein. (683 aa)
	A0A1L9SQL7	Uncharacterized protein. (701 aa)
	A0A1L9SQN4	U1-type domain-containing protein. (287 aa)
	A0A1L9SQZ7	Uncharacterized protein. (1226 aa)
	A0A1L9SQZ8	Nop domain-containing protein. (528 aa)
	A0A1L9SR07	Uncharacterized protein. (792 aa)
	A0A1L9SR14	Uncharacterized protein. (674 aa)
	A0A1L9SR36	Uncharacterized protein. (205 aa)
	A0A1L9SR49	Uncharacterized protein. (672 aa)
	A0A1L9SRF4	WD_REPEATS_REGION domain-containing protein. (454 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	A0A1L9SS45	Uncharacterized protein. (130 aa)
	A0A1L9SSA7	Uncharacterized protein. (595 aa)
	A0A1L9SSQ5	CVNH domain-containing protein. (287 aa)
	A0A1L9SSZ0	GH16 domain-containing protein. (413 aa)
	A0A1L9ST09	Uncharacterized protein. (209 aa)
	A0A1L9STH2	Uncharacterized protein. (139 aa)
	A0A1L9STK1	RRM domain-containing protein. (222 aa)
	A0A1L9STT3	Uncharacterized protein. (1126 aa)
	A0A1L9STX5	Nuclear cap-binding protein subunit 2. (177 aa)
	A0A1L9STZ4	Uncharacterized protein. (233 aa)
	A0A1L9SU29	RRM domain-containing protein. (394 aa)
	A0A1L9SUC5	Helicase C-terminal domain-containing protein. (406 aa)
	A0A1L9SUF0	Uncharacterized protein. (341 aa)
	A0A1L9SUF1	PAT1 domain-containing protein. (842 aa)
	A0A1L9SUG8	Uncharacterized protein. (249 aa)
	A0A1L9SUX1	TPR_REGION domain-containing protein. (851 aa)
	A0A1L9SV46	MFAP1 domain-containing protein. (517 aa)
	A0A1L9SV51	Uncharacterized protein. (1589 aa)
	A0A1L9SV65	RRM domain-containing protein. (392 aa)
	A0A1L9SVB6	Small nuclear ribonucleoprotein Sm D2. (94 aa)
	A0A1L9SVD9	Uncharacterized protein. (476 aa)
	A0A1L9SVG2	Uncharacterized protein. (1253 aa)
	A0A1L9SVH6	Sm domain-containing protein. (332 aa)
	A0A1L9SVN7	Uncharacterized protein. (100 aa)
	A0A1L9SVU4	MPN domain-containing protein. (2355 aa)
	A0A1L9SW92	RRM domain-containing protein. (919 aa)
	A0A1L9SWI9	Uncharacterized protein. (301 aa)
	A0A1L9SWL7	FHA domain-containing protein. (160 aa)
	A0A1L9SWU1	SF1-HH domain-containing protein. (294 aa)
	A0A1L9SX80	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)

Your Current Organism:

Penicilliopsis zonata

NCBI taxonomy Id: 1073090
Other names: Aspergillus zonatus CBS 506.65, P. zonata CBS 506.65, Penicilliopsis zonata CBS 506.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L9S6A9	A0A1L9S787	A0A1L9S6A9	A0A1L9S787	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Sm domain-containing protein.	0.990
A0A1L9S6A9	A0A1L9S7J4	A0A1L9S6A9	A0A1L9S7J4	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.942
A0A1L9S6A9	A0A1L9S811	A0A1L9S6A9	A0A1L9S811	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	RRM domain-containing protein.	0.989
A0A1L9S6A9	A0A1L9S818	A0A1L9S6A9	A0A1L9S818	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.994
A0A1L9S6A9	A0A1L9S8E1	A0A1L9S6A9	A0A1L9S8E1	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.980
A0A1L9S6A9	A0A1L9S8J2	A0A1L9S6A9	A0A1L9S8J2	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Slu7 domain-containing protein.	0.913
A0A1L9S6A9	A0A1L9S989	A0A1L9S6A9	A0A1L9S989	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.979
A0A1L9S6A9	A0A1L9S994	A0A1L9S6A9	A0A1L9S994	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.981
A0A1L9S6A9	A0A1L9S9G6	A0A1L9S6A9	A0A1L9S9G6	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Cwf21 domain-containing protein.	0.971
A0A1L9S6A9	A0A1L9S9L0	A0A1L9S6A9	A0A1L9S9L0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	SNRNP27 domain-containing protein.	0.857
A0A1L9S6A9	A0A1L9S9Y2	A0A1L9S6A9	A0A1L9S9Y2	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	PPIase cyclophilin-type domain-containing protein.	0.946
A0A1L9S6A9	A0A1L9SA61	A0A1L9S6A9	A0A1L9SA61	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.992
A0A1L9S6A9	A0A1L9SA75	A0A1L9S6A9	A0A1L9SA75	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.993
A0A1L9S6A9	A0A1L9SA80	A0A1L9S6A9	A0A1L9SA80	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D3.	0.997
A0A1L9S6A9	A0A1L9SAA8	A0A1L9S6A9	A0A1L9SAA8	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.921
A0A1L9S6A9	A0A1L9SAZ3	A0A1L9S6A9	A0A1L9SAZ3	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.725
A0A1L9S6A9	A0A1L9SB17	A0A1L9S6A9	A0A1L9SB17	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.902
A0A1L9S6A9	A0A1L9SBL5	A0A1L9S6A9	A0A1L9SBL5	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.985
A0A1L9S6A9	A0A1L9SBR4	A0A1L9S6A9	A0A1L9SBR4	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Sm domain-containing protein.	0.999
A0A1L9S6A9	A0A1L9SBU5	A0A1L9S6A9	A0A1L9SBU5	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.892