14 items (Penicilliopsis zonata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9S6C0	SAP30_Sin3_bdg domain-containing protein. (223 aa)
	A0A1L9S816	Uncharacterized protein. (439 aa)
	A0A1L9S817	Uncharacterized protein. (629 aa)
	A0A1L9SA26	Uncharacterized protein. (278 aa)
	A0A1L9SAL3	Uncharacterized protein. (645 aa)
	A0A1L9SCZ6	Fip1 domain-containing protein. (337 aa)
	A0A1L9SF30	Uncharacterized protein. (918 aa)
	A0A1L9SGA7	DUF3453 domain-containing protein. (731 aa)
	A0A1L9SL25	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (308 aa)
	A0A1L9SL69	Uncharacterized protein. (254 aa)
	A0A1L9SLG5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
	A0A1L9STK2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (128 aa)
	A0A1L9STN2	RRM domain-containing protein. (295 aa)
	A0A1L9SWE1	Cleavage and polyadenylation specificity factor subunit 2. (1034 aa)

Your Current Organism:

Penicilliopsis zonata

NCBI taxonomy Id: 1073090
Other names: Aspergillus zonatus CBS 506.65, P. zonata CBS 506.65, Penicilliopsis zonata CBS 506.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9S6C0	A0A1L9SAL3	SAP30_Sin3_bdg domain-containing protein.	Uncharacterized protein.	0.621
A0A1L9S6C0	A0A1L9SF30	SAP30_Sin3_bdg domain-containing protein.	Uncharacterized protein.	0.623
A0A1L9S6C0	A0A1L9SL69	SAP30_Sin3_bdg domain-containing protein.	Uncharacterized protein.	0.590
A0A1L9S6C0	A0A1L9STK2	SAP30_Sin3_bdg domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.542
A0A1L9S6C0	A0A1L9STN2	SAP30_Sin3_bdg domain-containing protein.	RRM domain-containing protein.	0.608
A0A1L9S6C0	A0A1L9SWE1	SAP30_Sin3_bdg domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.623
A0A1L9S816	A0A1L9SAL3	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A1L9S816	A0A1L9SL25	Uncharacterized protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.405
A0A1L9S816	A0A1L9SL69	Uncharacterized protein.	Uncharacterized protein.	0.638
A0A1L9S816	A0A1L9STK2	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.483
A0A1L9S816	A0A1L9STN2	Uncharacterized protein.	RRM domain-containing protein.	0.961
A0A1L9S817	A0A1L9SAL3	Uncharacterized protein.	Uncharacterized protein.	0.925
A0A1L9S817	A0A1L9SCZ6	Uncharacterized protein.	Fip1 domain-containing protein.	0.994
A0A1L9S817	A0A1L9SF30	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A1L9S817	A0A1L9SGA7	Uncharacterized protein.	DUF3453 domain-containing protein.	0.969
A0A1L9S817	A0A1L9SL25	Uncharacterized protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.993
A0A1L9S817	A0A1L9SL69	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A1L9S817	A0A1L9STN2	Uncharacterized protein.	RRM domain-containing protein.	0.939
A0A1L9S817	A0A1L9SWE1	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.998
A0A1L9SA26	A0A1L9SAL3	Uncharacterized protein.	Uncharacterized protein.	0.921