28 items (Penicilliopsis zonata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9SP78	Uncharacterized protein. (2536 aa)
	A0A1L9S5N5	ABM domain-containing protein. (97 aa)
	A0A1L9S6Q4	Uncharacterized protein; Belongs to the DEAD box helicase family. (490 aa)
	A0A1L9S798	Uncharacterized protein. (1110 aa)
	A0A1L9S7E3	Uncharacterized protein. (441 aa)
	A0A1L9S8A1	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1431 aa)
	A0A1L9S994	Uncharacterized protein. (839 aa)
	A0A1L9SA24	Uncharacterized protein. (621 aa)
	A0A1L9SBQ6	NTF2 domain-containing protein. (162 aa)
	A0A1L9SE86	Uncharacterized protein. (458 aa)
	A0A1L9SGX3	Uncharacterized protein. (646 aa)
	A0A1L9SJC1	Uncharacterized protein. (304 aa)
	A0A1L9SK81	Importin N-terminal domain-containing protein. (1095 aa)
	A0A1L9SKQ7	PCI domain-containing protein. (454 aa)
	A0A1L9SKX4	Uncharacterized protein. (493 aa)
	A0A1L9SL39	RRM domain-containing protein. (486 aa)
	A0A1L9SLV9	Uncharacterized protein. (1171 aa)
	A0A1L9SN42	RPOL4c domain-containing protein. (148 aa)
	A0A1L9SPV3	Uncharacterized protein. (433 aa)
	A0A1L9SQ53	Uncharacterized protein. (376 aa)
	A0A1L9SQV7	WD_REPEATS_REGION domain-containing protein. (363 aa)
	A0A1L9SRB2	Uncharacterized protein. (84 aa)
	A0A1L9SRL0	Uncharacterized protein. (524 aa)
	A0A1L9SRP9	TFIIS N-terminal domain-containing protein. (358 aa)
	A0A1L9SSM5	Uncharacterized protein. (643 aa)
	A0A1L9STR3	Uncharacterized protein. (333 aa)
	A0A1L9SVD6	RRM domain-containing protein. (149 aa)
	A0A1L9SWL7	FHA domain-containing protein. (160 aa)

Your Current Organism:

Penicilliopsis zonata

NCBI taxonomy Id: 1073090
Other names: Aspergillus zonatus CBS 506.65, P. zonata CBS 506.65, Penicilliopsis zonata CBS 506.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9S5N5	A0A1L9S7E3	ABM domain-containing protein.	Uncharacterized protein.	0.967
A0A1L9S5N5	A0A1L9S994	ABM domain-containing protein.	Uncharacterized protein.	0.669
A0A1L9S5N5	A0A1L9SA24	ABM domain-containing protein.	Uncharacterized protein.	0.537
A0A1L9S5N5	A0A1L9SBQ6	ABM domain-containing protein.	NTF2 domain-containing protein.	0.475
A0A1L9S5N5	A0A1L9SGX3	ABM domain-containing protein.	Uncharacterized protein.	0.892
A0A1L9S5N5	A0A1L9SKX4	ABM domain-containing protein.	Uncharacterized protein.	0.596
A0A1L9S5N5	A0A1L9SLV9	ABM domain-containing protein.	Uncharacterized protein.	0.418
A0A1L9S5N5	A0A1L9SQ53	ABM domain-containing protein.	Uncharacterized protein.	0.753
A0A1L9S5N5	A0A1L9STR3	ABM domain-containing protein.	Uncharacterized protein.	0.813
A0A1L9S5N5	A0A1L9SVD6	ABM domain-containing protein.	RRM domain-containing protein.	0.843
A0A1L9S6Q4	A0A1L9S7E3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.662
A0A1L9S6Q4	A0A1L9SKX4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.793
A0A1L9S6Q4	A0A1L9SLV9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.594
A0A1L9S6Q4	A0A1L9SQV7	Uncharacterized protein; Belongs to the DEAD box helicase family.	WD_REPEATS_REGION domain-containing protein.	0.539
A0A1L9S6Q4	A0A1L9SRL0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.966
A0A1L9S6Q4	A0A1L9SVD6	Uncharacterized protein; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.550
A0A1L9S798	A0A1L9S7E3	Uncharacterized protein.	Uncharacterized protein.	0.644
A0A1L9S798	A0A1L9SA24	Uncharacterized protein.	Uncharacterized protein.	0.415
A0A1L9S798	A0A1L9SK81	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.743
A0A1L9S798	A0A1L9SQV7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.608