13 items (Penicilliopsis zonata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9SJZ4	Proteasome subunit alpha type. (297 aa)
	A0A1L9SA17	Proteasome subunit alpha type. (260 aa)
	A0A1L9S9I6	Proteasome subunit alpha type. (263 aa)
	A0A1L9S6X7	Proteasome subunit beta. (232 aa)
	A0A1L9SDS6	Proteasome subunit alpha type. (255 aa)
	A0A1L9SBK4	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (1133 aa)
	A0A1L9SGE7	AAA domain-containing protein; Belongs to the AAA ATPase family. (389 aa)
	A0A1L9SHT0	Proteasome subunit alpha type. (246 aa)
	A0A1L9SIM7	Proteasome endopeptidase complex. (264 aa)
	A0A1L9SAJ5	MPN domain-containing protein. (354 aa)
	A0A1L9SUX8	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (905 aa)
	A0A1L9SVR0	MPN domain-containing protein. (335 aa)
	A0A1L9SWL5	Proteasome subunit alpha type. (254 aa)

Your Current Organism:

Penicilliopsis zonata

NCBI taxonomy Id: 1073090
Other names: Aspergillus zonatus CBS 506.65, P. zonata CBS 506.65, Penicilliopsis zonata CBS 506.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9S6X7	A0A1L9S9I6	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
A0A1L9S6X7	A0A1L9SA17	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
A0A1L9S6X7	A0A1L9SAJ5	Proteasome subunit beta.	MPN domain-containing protein.	0.992
A0A1L9S6X7	A0A1L9SBK4	Proteasome subunit beta.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.991
A0A1L9S6X7	A0A1L9SDS6	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
A0A1L9S6X7	A0A1L9SGE7	Proteasome subunit beta.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.991
A0A1L9S6X7	A0A1L9SHT0	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
A0A1L9S6X7	A0A1L9SIM7	Proteasome subunit beta.	Proteasome endopeptidase complex.	0.999
A0A1L9S6X7	A0A1L9SJZ4	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
A0A1L9S6X7	A0A1L9SUX8	Proteasome subunit beta.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.990
A0A1L9S6X7	A0A1L9SVR0	Proteasome subunit beta.	MPN domain-containing protein.	0.998
A0A1L9S6X7	A0A1L9SWL5	Proteasome subunit beta.	Proteasome subunit alpha type.	0.999
A0A1L9S9I6	A0A1L9S6X7	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
A0A1L9S9I6	A0A1L9SA17	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
A0A1L9S9I6	A0A1L9SAJ5	Proteasome subunit alpha type.	MPN domain-containing protein.	0.998
A0A1L9S9I6	A0A1L9SBK4	Proteasome subunit alpha type.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.997
A0A1L9S9I6	A0A1L9SDS6	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
A0A1L9S9I6	A0A1L9SGE7	Proteasome subunit alpha type.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.995
A0A1L9S9I6	A0A1L9SHT0	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
A0A1L9S9I6	A0A1L9SIM7	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999