58 items (Penicilliopsis zonata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9SGX3	Uncharacterized protein. (646 aa)
	A0A1L9SHZ7	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (376 aa)
	A0A1L9SIH8	Uncharacterized protein. (292 aa)
	A0A1L9SJC1	Uncharacterized protein. (304 aa)
	A0A1L9SK81	Importin N-terminal domain-containing protein. (1095 aa)
	A0A1L9SKI2	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (762 aa)
	A0A1L9SKQ7	PCI domain-containing protein. (454 aa)
	A0A1L9SKX4	Uncharacterized protein. (493 aa)
	A0A1L9SL09	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures. (94 aa)
	A0A1L9SL39	RRM domain-containing protein. (486 aa)
	A0A1L9SL61	MPN domain-containing protein. (651 aa)
	A0A1L9SLV9	Uncharacterized protein. (1171 aa)
	A0A1L9SM81	Uncharacterized protein. (91 aa)
	A0A1L9SMH8	RRM domain-containing protein. (265 aa)
	A0A1L9SMV1	Uncharacterized protein. (261 aa)
	A0A1L9SN08	Uncharacterized protein. (892 aa)
	A0A1L9SN42	RPOL4c domain-containing protein. (148 aa)
	A0A1L9SNI6	ELYS domain-containing protein. (316 aa)
	A0A1L9SNR5	C3H1-type domain-containing protein. (538 aa)
	A0A1L9SP78	Uncharacterized protein. (2536 aa)
	A0A1L9SPK5	Peptidase S59 domain-containing protein. (2044 aa)
	A0A1L9SPV3	Uncharacterized protein. (433 aa)
	A0A1L9SQ53	Uncharacterized protein. (376 aa)
	A0A1L9SQI9	Uncharacterized protein. (1336 aa)
	A0A1L9SQV7	WD_REPEATS_REGION domain-containing protein. (363 aa)
	A0A1L9SRB2	Uncharacterized protein. (84 aa)
	A0A1L9SRE1	Uncharacterized protein. (1323 aa)
	A0A1L9SRK6	Nup54 domain-containing protein. (417 aa)
	A0A1L9SRL0	Uncharacterized protein. (524 aa)
	A0A1L9SRL9	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1050 aa)
	A0A1L9SRP9	TFIIS N-terminal domain-containing protein. (358 aa)
	A0A1L9SS19	Nup188_C domain-containing protein. (1823 aa)
	A0A1L9SSM5	Uncharacterized protein. (643 aa)
	A0A1L9SSU2	NUP214 domain-containing protein. (1531 aa)
	A0A1L9STJ5	Uncharacterized protein. (888 aa)
	A0A1L9STR3	Uncharacterized protein. (333 aa)
	A0A1L9STX5	Nuclear cap-binding protein subunit 2. (177 aa)
	A0A1L9SVD6	RRM domain-containing protein. (149 aa)
	A0A1L9S6Q4	Uncharacterized protein; Belongs to the DEAD box helicase family. (490 aa)
	A0A1L9SC28	Uncharacterized protein. (656 aa)
	A0A1L9SVN9	Nsp1_C domain-containing protein. (685 aa)
	A0A1L9S6B4	Uncharacterized protein. (1377 aa)
	A0A1L9SWL7	FHA domain-containing protein. (160 aa)
	A0A1L9S5N5	ABM domain-containing protein. (97 aa)
	A0A1L9SBQ6	NTF2 domain-containing protein. (162 aa)
	A0A1L9SA24	Uncharacterized protein. (621 aa)
	A0A1L9SA22	HECT domain-containing protein. (4019 aa)
	A0A1L9S9H5	Uncharacterized protein. (188 aa)
	A0A1L9S994	Uncharacterized protein. (839 aa)
	A0A1L9S8A2	Uncharacterized protein. (659 aa)
	A0A1L9S8A1	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1431 aa)
	A0A1L9S857	Uncharacterized protein. (1249 aa)
	A0A1L9S856	Uncharacterized protein; Belongs to the DEAD box helicase family. (503 aa)
	A0A1L9S7E3	Uncharacterized protein. (441 aa)
	A0A1L9S798	Uncharacterized protein. (1110 aa)
	A0A1L9SC86	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (295 aa)
	A0A1L9SE86	Uncharacterized protein. (458 aa)
	A0A1L9SGM9	Uncharacterized protein. (1048 aa)

Your Current Organism:

Penicilliopsis zonata

NCBI taxonomy Id: 1073090
Other names: Aspergillus zonatus CBS 506.65, P. zonata CBS 506.65, Penicilliopsis zonata CBS 506.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9S5N5	A0A1L9S7E3	ABM domain-containing protein.	Uncharacterized protein.	0.967
A0A1L9S5N5	A0A1L9S856	ABM domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.597
A0A1L9S5N5	A0A1L9S994	ABM domain-containing protein.	Uncharacterized protein.	0.669
A0A1L9S5N5	A0A1L9SA24	ABM domain-containing protein.	Uncharacterized protein.	0.537
A0A1L9S5N5	A0A1L9SBQ6	ABM domain-containing protein.	NTF2 domain-containing protein.	0.475
A0A1L9S5N5	A0A1L9SGX3	ABM domain-containing protein.	Uncharacterized protein.	0.892
A0A1L9S5N5	A0A1L9SKX4	ABM domain-containing protein.	Uncharacterized protein.	0.596
A0A1L9S5N5	A0A1L9SLV9	ABM domain-containing protein.	Uncharacterized protein.	0.418
A0A1L9S5N5	A0A1L9SM81	ABM domain-containing protein.	Uncharacterized protein.	0.843
A0A1L9S5N5	A0A1L9SMH8	ABM domain-containing protein.	RRM domain-containing protein.	0.843
A0A1L9S5N5	A0A1L9SQ53	ABM domain-containing protein.	Uncharacterized protein.	0.753
A0A1L9S5N5	A0A1L9STR3	ABM domain-containing protein.	Uncharacterized protein.	0.813
A0A1L9S5N5	A0A1L9STX5	ABM domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.668
A0A1L9S5N5	A0A1L9SVD6	ABM domain-containing protein.	RRM domain-containing protein.	0.843
A0A1L9S6B4	A0A1L9S7E3	Uncharacterized protein.	Uncharacterized protein.	0.568
A0A1L9S6B4	A0A1L9S856	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.582
A0A1L9S6B4	A0A1L9S857	Uncharacterized protein.	Uncharacterized protein.	0.795
A0A1L9S6B4	A0A1L9S994	Uncharacterized protein.	Uncharacterized protein.	0.731
A0A1L9S6B4	A0A1L9SBQ6	Uncharacterized protein.	NTF2 domain-containing protein.	0.699
A0A1L9S6B4	A0A1L9SC28	Uncharacterized protein.	Uncharacterized protein.	0.574