30 items (Penicilliopsis zonata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (293 aa)
	A0A1L9S8A8	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (686 aa)
	A0A1L9S8G2	40S ribosomal protein S27. (82 aa)
	A0A1L9S8L3	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (192 aa)
	A0A1L9SA65	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (237 aa)
	A0A1L9SCA9	BZIP domain-containing protein. (233 aa)
	A0A1L9SE09	Abhydrolase_3 domain-containing protein. (402 aa)
	A0A1L9SE85	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (62 aa)
	A0A1L9SEW4	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (79 aa)
	A0A1L9SF09	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	A0A1L9SHF6	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	A0A1L9SHH1	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (150 aa)
	A0A1L9SHS2	Uncharacterized protein. (142 aa)
	A0A1L9SHS8	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	A0A1L9SI93	Uncharacterized protein. (310 aa)
	A0A1L9SIQ5	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (160 aa)
	A0A1L9SIT2	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (88 aa)
	A0A1L9SIX8	CIA30 domain-containing protein. (174 aa)
	A0A1L9SK12	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (112 aa)
	A0A1L9SKG7	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (151 aa)
	A0A1L9SKG8	Uncharacterized protein. (546 aa)
	A0A1L9SKI7	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (200 aa)
	A0A1L9SKS8	Uncharacterized protein. (148 aa)
	A0A1L9SLN2	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (133 aa)
	A0A1L9SP01	Uncharacterized protein. (68 aa)
	A0A1L9SQ15	S10_plectin domain-containing protein. (160 aa)
	A0A1L9SQ24	Uncharacterized protein. (56 aa)
	A0A1L9SWQ3	Ubiquitin-like domain-containing protein. (154 aa)
	A0A1L9SWW1	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
	A0A1L9SX20	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (262 aa)

Your Current Organism:

Penicilliopsis zonata

NCBI taxonomy Id: 1073090
Other names: Aspergillus zonatus CBS 506.65, P. zonata CBS 506.65, Penicilliopsis zonata CBS 506.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L9S8A8	A0A1L9SA65	A0A1L9S8A8	A0A1L9SA65	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.468
A0A1L9S8A8	A0A1L9SKS8	A0A1L9S8A8	A0A1L9SKS8	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	Uncharacterized protein.	0.468
A0A1L9S8G2	A0A1L9S8L3	A0A1L9S8G2	A0A1L9S8L3	40S ribosomal protein S27.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.999
A0A1L9S8G2	A0A1L9SA65	A0A1L9S8G2	A0A1L9SA65	40S ribosomal protein S27.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
A0A1L9S8G2	A0A1L9SCA9	A0A1L9S8G2	A0A1L9SCA9	40S ribosomal protein S27.	BZIP domain-containing protein.	0.982
A0A1L9S8G2	A0A1L9SE09	A0A1L9S8G2	A0A1L9SE09	40S ribosomal protein S27.	Abhydrolase_3 domain-containing protein.	0.995
A0A1L9S8G2	A0A1L9SE85	A0A1L9S8G2	A0A1L9SE85	40S ribosomal protein S27.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
A0A1L9S8G2	A0A1L9SEW4	A0A1L9S8G2	A0A1L9SEW4	40S ribosomal protein S27.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
A0A1L9S8G2	A0A1L9SF09	A0A1L9S8G2	A0A1L9SF09	40S ribosomal protein S27.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.999
A0A1L9S8G2	A0A1L9SHF6	A0A1L9S8G2	A0A1L9SHF6	40S ribosomal protein S27.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.999
A0A1L9S8G2	A0A1L9SHH1	A0A1L9S8G2	A0A1L9SHH1	40S ribosomal protein S27.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.999
A0A1L9S8G2	A0A1L9SHS2	A0A1L9S8G2	A0A1L9SHS2	40S ribosomal protein S27.	Uncharacterized protein.	0.999
A0A1L9S8G2	A0A1L9SHS8	A0A1L9S8G2	A0A1L9SHS8	40S ribosomal protein S27.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
A0A1L9S8G2	A0A1L9SI93	A0A1L9S8G2	A0A1L9SI93	40S ribosomal protein S27.	Uncharacterized protein.	0.994
A0A1L9S8G2	A0A1L9SIQ5	A0A1L9S8G2	A0A1L9SIQ5	40S ribosomal protein S27.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.999
A0A1L9S8G2	A0A1L9SIT2	A0A1L9S8G2	A0A1L9SIT2	40S ribosomal protein S27.	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability.	0.928
A0A1L9S8G2	A0A1L9SIX8	A0A1L9S8G2	A0A1L9SIX8	40S ribosomal protein S27.	CIA30 domain-containing protein.	0.982
A0A1L9S8G2	A0A1L9SK12	A0A1L9S8G2	A0A1L9SK12	40S ribosomal protein S27.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
A0A1L9S8G2	A0A1L9SKG7	A0A1L9S8G2	A0A1L9SKG7	40S ribosomal protein S27.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.993
A0A1L9S8G2	A0A1L9SKG8	A0A1L9S8G2	A0A1L9SKG8	40S ribosomal protein S27.	Uncharacterized protein.	0.993