31 items (Penicilliopsis zonata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9SG35	Uncharacterized protein. (370 aa)
	A0A1L9SUX2	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (145 aa)
	A0A1L9SUK6	Uncharacterized protein. (391 aa)
	A0A1L9STX5	Nuclear cap-binding protein subunit 2. (177 aa)
	A0A1L9STK2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (128 aa)
	A0A1L9SSE5	Uncharacterized protein. (236 aa)
	A0A1L9SS31	Helicase ATP-binding domain-containing protein. (796 aa)
	A0A1L9SQM8	Uncharacterized protein. (74 aa)
	A0A1L9SQ87	Uncharacterized protein. (648 aa)
	A0A1L9SP70	CYCLIN domain-containing protein; Belongs to the cyclin family. (434 aa)
	A0A1L9SNV0	Uncharacterized protein. (1153 aa)
	A0A1L9SN42	RPOL4c domain-containing protein. (148 aa)
	A0A1L9SLP7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1256 aa)
	A0A1L9SLG7	Uncharacterized protein. (74 aa)
	A0A1L9SL43	Uncharacterized protein. (160 aa)
	A0A1L9SKI3	TYR_PHOSPHATASE_2 domain-containing protein. (671 aa)
	A0A1L9SJ40	RPOLD domain-containing protein. (338 aa)
	A0A1L9SHD2	Methyltransf_25 domain-containing protein. (245 aa)
	A0A1L9SGL0	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (484 aa)
	A0A1L9SGD1	Uncharacterized protein. (502 aa)
	A0A1L9SFP7	Uncharacterized protein. (169 aa)
	A0A1L9SEP3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1738 aa)
	A0A1L9SEK0	Uncharacterized protein. (621 aa)
	A0A1L9SE56	Uncharacterized protein. (1058 aa)
	A0A1L9SCB1	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (460 aa)
	A0A1L9SBP0	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1048 aa)
	A0A1L9SBM6	Uncharacterized protein. (336 aa)
	A0A1L9SB91	Uncharacterized protein. (72 aa)
	A0A1L9S994	Uncharacterized protein. (839 aa)
	A0A1L9S7Y6	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (414 aa)
	A0A1L9S782	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (388 aa)

Your Current Organism:

Penicilliopsis zonata

NCBI taxonomy Id: 1073090
Other names: Aspergillus zonatus CBS 506.65, P. zonata CBS 506.65, Penicilliopsis zonata CBS 506.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9S782	A0A1L9S7Y6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family.	0.714
A0A1L9S782	A0A1L9S994	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.655
A0A1L9S782	A0A1L9SB91	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.806
A0A1L9S782	A0A1L9SBM6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.999
A0A1L9S782	A0A1L9SBP0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.881
A0A1L9S782	A0A1L9SCB1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.988
A0A1L9S782	A0A1L9SE56	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.727
A0A1L9S782	A0A1L9SEK0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.868
A0A1L9S782	A0A1L9SEP3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.989
A0A1L9S782	A0A1L9SFP7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.916
A0A1L9S782	A0A1L9SG35	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.863
A0A1L9S782	A0A1L9SGD1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.857
A0A1L9S782	A0A1L9SGL0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.962
A0A1L9S782	A0A1L9SHD2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Methyltransf_25 domain-containing protein.	0.660
A0A1L9S782	A0A1L9SJ40	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RPOLD domain-containing protein.	0.948
A0A1L9S782	A0A1L9SKI3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	TYR_PHOSPHATASE_2 domain-containing protein.	0.713
A0A1L9S782	A0A1L9SL43	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.878
A0A1L9S782	A0A1L9SLG7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.860
A0A1L9S782	A0A1L9SLP7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.930
A0A1L9S782	A0A1L9SN42	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RPOL4c domain-containing protein.	0.940