15 items (Torulaspora delbrueckii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TDEL0H02710	Uncharacterized protein. (176 aa)
	TDEL0B01600	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (209 aa)
	TDEL0B06190	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (156 aa)
	TDEL0B06430	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (525 aa)
	TDEL0C01050	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (189 aa)
	TDEL0C02480	Uncharacterized protein. (147 aa)
	TDEL0D00720	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (159 aa)
	TDEL0D01150	Uncharacterized protein; Belongs to the synaptobrevin family. (200 aa)
	TDEL0D04580	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (482 aa)
	TDEL0D06430	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (536 aa)
	TDEL0E03260	SRP54 domain-containing protein. (603 aa)
	TDEL0E04420	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (190 aa)
	TDEL0F00550	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (147 aa)
	TDEL0G04080	Uncharacterized protein; Belongs to the synaptobrevin family. (214 aa)
	TDEL0H02890	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (442 aa)

Your Current Organism:

Torulaspora delbrueckii

NCBI taxonomy Id: 1076872
Other names: T. delbrueckii CBS 1146, Torulaspora delbrueckii CBS 1146

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TDEL0B01600	TDEL0C02480	G8ZNU5	G8ZRJ5	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein.	0.999
TDEL0B01600	TDEL0D00720	G8ZNU5	G8ZSR2	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.999
TDEL0B01600	TDEL0D01150	G8ZNU5	G8ZSV5	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.601
TDEL0B01600	TDEL0G04080	G8ZNU5	G8ZY08	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.622
TDEL0B01600	TDEL0H02710	G8ZNU5	G8ZZT6	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein.	0.999
TDEL0B06190	TDEL0B06430	G8ZQ54	G8ZQ78	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.989
TDEL0B06190	TDEL0D04580	G8ZQ54	G8ZTU8	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.684
TDEL0B06190	TDEL0E04420	G8ZQ54	G8ZVP1	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.617
TDEL0B06190	TDEL0F00550	G8ZQ54	G8ZW72	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.460
TDEL0B06190	TDEL0H02890	G8ZQ54	G8ZZV4	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.999
TDEL0B06430	TDEL0B06190	G8ZQ78	G8ZQ54	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.989
TDEL0B06430	TDEL0D04580	G8ZQ78	G8ZTU8	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.643
TDEL0B06430	TDEL0E04420	G8ZQ78	G8ZVP1	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.672
TDEL0B06430	TDEL0F00550	G8ZQ78	G8ZW72	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.555
TDEL0B06430	TDEL0H02890	G8ZQ78	G8ZZV4	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.439
TDEL0C01050	TDEL0D01150	G8ZR52	G8ZSV5	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.683
TDEL0C01050	TDEL0D06430	G8ZR52	G8ZUD3	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.998
TDEL0C01050	TDEL0G04080	G8ZR52	G8ZY08	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.793
TDEL0C02480	TDEL0B01600	G8ZRJ5	G8ZNU5	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.999
TDEL0C02480	TDEL0D00720	G8ZRJ5	G8ZSR2	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.999