STRINGSTRING
BVIR_1017 BVIR_1017 ycgM_1 ycgM_1 BVIR_1753 BVIR_1753 ifcA ifcA gabD gabD BVIR_2101 BVIR_2101 prpD prpD prpC prpC prpB prpB porB porB aarA aarA sucD_1 sucD_1 sucC sucC mdh mdh sdhB sdhB sdhA sdhA BVIR_2657 BVIR_2657 sdhC sdhC tme tme fumC fumC gltD_3 gltD_3 BVIR_2957 BVIR_2957 frdA frdA frdB frdB frdC frdC frdD frdD fdxA fdxA BVIR_454 BVIR_454 BVIR_455 BVIR_455 porA porA BVIR_457 BVIR_457 BVIR_458 BVIR_458 BVIR_498 BVIR_498 acnA acnA BVIR_704 BVIR_704 aceB aceB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BVIR_1017Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (405 aa)
ycgM_1Fumarylpyruvate hydrolase. (233 aa)
BVIR_1753Hypothetical protein. (371 aa)
ifcAFumarate reductase flavoprotein subunit precursor. (445 aa)
gabDGlutarate-semialdehyde dehydrogenase DavD; Belongs to the aldehyde dehydrogenase family. (484 aa)
BVIR_2101Anaerobic benzoate catabolism transcriptional regulator. (471 aa)
prpD2-methylcitrate dehydratase. (519 aa)
prpC2-methylcitrate synthase; Belongs to the citrate synthase family. (403 aa)
prpBMethylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. (306 aa)
porBPyruvate-flavodoxin oxidoreductase. (1659 aa)
aarACitrate synthase; Belongs to the citrate synthase family. (440 aa)
sucD_1Succinyl-CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (294 aa)
sucCSuccinyl-CoA ligase [ADP-forming] subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (399 aa)
mdhMalate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (321 aa)
sdhBSuccinate dehydrogenase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (259 aa)
sdhASuccinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (609 aa)
BVIR_2657Succinate dehydrogenase/Fumarate reductase transmembrane subunit. (131 aa)
sdhCSuccinate dehydrogenase cytochrome b556 subunit. (132 aa)
tmeNADP-dependent malic enzyme. (759 aa)
fumCFumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (466 aa)
gltD_3Glutamate synthase [NADPH] small chain. (666 aa)
BVIR_2957NADP-reducing hydrogenase subunit HndC. (614 aa)
frdAFumarate reductase flavoprotein subunit. (588 aa)
frdBFumarate reductase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (250 aa)
frdCFumarate reductase subunit C. (150 aa)
frdDFumarate reductase subunit D. (121 aa)
fdxAFerredoxin-2; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (111 aa)
BVIR_4542-oxoglutarate ferredoxin oxidoreductase subunit gamma. (184 aa)
BVIR_4552-oxoglutarate oxidoreductase subunit KorB. (281 aa)
porA2-oxoglutarate oxidoreductase subunit KorA. (379 aa)
BVIR_457Electron transport complex subunit RsxB. (320 aa)
BVIR_458NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (604 aa)
BVIR_498NADP-reducing hydrogenase subunit HndC. (642 aa)
acnAAconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (902 aa)
BVIR_704Indolepyruvate ferredoxin oxidoreductase. (1164 aa)
aceBMalate synthase A; Belongs to the malate synthase family. (999 aa)
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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