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| | rpsD | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (205 aa) |
| | clpX | ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (420 aa) |
| | glgC | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (439 aa) |
| | hycE | Formate hydrogenlyase subunit 5 precursor. (497 aa) |
| | hycG | Formate hydrogenlyase subunit 7. (174 aa) |
| | ppk | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (745 aa) |
| | BVIR_1095 | YcfA-like protein. (65 aa) |
| | BVIR_1096 | Hypothetical protein. (95 aa) |
| | BVIR_1097 | Hypothetical protein. (82 aa) |
| | nrdE | Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. (1268 aa) |
| | ubiF | 2-octaprenylphenol hydroxylase. (408 aa) |
| | accC | Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (449 aa) |
| | accB | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (158 aa) |
| | BVIR_1112 | Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase. (142 aa) |
| | yhhJ | Inner membrane transport permease YhhJ. (375 aa) |
| | sufB | FeS cluster assembly protein SufB. (494 aa) |
| | sufC | Putative ATP-dependent transporter SufC. (248 aa) |
| | sufD | FeS cluster assembly protein SufD. (442 aa) |
| | leuD | 3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (201 aa) |
| | BVIR_1193 | Hypothetical protein. (1265 aa) |
| | BVIR_1216 | Putative antitoxin of the YafO-YafN toxin-antitoxin system; Antitoxin component of a type II toxin-antitoxin (TA) system. (82 aa) |
| | relE | mRNA interferase RelE. (96 aa) |
| | BVIR_1240 | Hypothetical protein. (281 aa) |
| | BVIR_1259 | Hypothetical protein; Belongs to the MT-A70-like family. (216 aa) |
| | mcl2_1 | (3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family. (299 aa) |
| | btuB | Vitamin B12 transporter BtuB precursor. (677 aa) |
| | phnD | Phosphate-import protein PhnD precursor. (302 aa) |
| | BVIR_1278 | Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG. (157 aa) |
| | phnH_1 | Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH. (197 aa) |
| | BVIR_1280 | Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI. (361 aa) |
| | BVIR_1281 | Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family. (297 aa) |
| | gsiA_1 | Putative phosphonates utilization ATP-binding protein PhnK. (258 aa) |
| | BVIR_1283 | Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL. (230 aa) |
| | BVIR_1296 | Polysaccharide biosynthesis/export protein. (182 aa) |
| | BVIR_1307 | Hypothetical protein. (249 aa) |
| | nqo2 | NADH-quinone oxidoreductase chain 2. (258 aa) |
| | nqo1 | NADH-quinone oxidoreductase chain 1; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (435 aa) |
| | mopII | Molybdenum-pterin-binding protein 2. (67 aa) |
| | gpsA | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (331 aa) |
| | rplA_1 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (236 aa) |
| | rplJ_1 | 50S ribosomal protein L10. (172 aa) |
| | rpoB_1 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1376 aa) |
| | rpoC | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1397 aa) |
| | rpsL | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (123 aa) |
| | rpsG | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rplB | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (278 aa) |
| | rpsS | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplV | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (128 aa) |
| | rplN | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsE | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (187 aa) |
| | rpmD | 50S ribosomal protein L30. (65 aa) |
| | rplO | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (161 aa) |
| | rpoA | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (338 aa) |
| | rarA | Replication-associated recombination protein A. (443 aa) |
| | accD5 | Putative propionyl-CoA carboxylase beta chain 5. (510 aa) |
| | hxuB | Heme/hemopexin transporter protein HuxB precursor. (567 aa) |
| | BVIR_1435 | Methylmalonyl-CoA carboxyltransferase 12S subunit. (535 aa) |
| | tpl | Tyrosine phenol-lyase. (481 aa) |
| | luxR_3 | Transcriptional activator protein LuxR. (245 aa) |
| | modE_2 | Molybdenum-pterin-binding protein MopA. (264 aa) |
| | appA_1 | Oligopeptide-binding protein AppA precursor. (600 aa) |
| | recG | ATP-dependent DNA helicase RecG. (700 aa) |
| | BVIR_1521 | Putative ABC transporter ATP-binding protein. (295 aa) |
| | mntB_1 | Manganese transport system membrane protein MntB. (294 aa) |
| | mntB_2 | Manganese transport system membrane protein MntB. (280 aa) |
| | peb1A_1 | General L-amino acid-binding periplasmic protein AapJ precursor; Belongs to the bacterial solute-binding protein 3 family. (342 aa) |
| | yecS | Inner membrane amino-acid ABC transporter permease protein YecS. (409 aa) |
| | yhdY | Inner membrane amino-acid ABC transporter permease protein YhdY. (377 aa) |
| | lasR | Transcriptional activator protein LasR. (232 aa) |
| | tatA | Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (85 aa) |
| | tatB | Sec-independent protein translocase protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. (148 aa) |
| | tatC | Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. (261 aa) |
| | nifK_1 | Nitrogenase molybdenum-iron protein beta chain. (460 aa) |
| | nifD_1 | Nitrogenase molybdenum-iron protein alpha chain. (507 aa) |
| | vnfK | Nitrogenase vanadium-iron protein beta chain. (461 aa) |
| | nifD_2 | Nitrogenase molybdenum-iron protein alpha chain. (506 aa) |
| | moaC | Cyclic pyranopterin monophosphate synthase accessory protein; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family. (167 aa) |
| | pabA | Anthranilate synthase component 2. (202 aa) |
| | dnaX_1 | DNA polymerase III subunit tau. (346 aa) |
| | gatA_1 | Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (493 aa) |
| | ygaV | Putative HTH-type transcriptional regulator YgaV. (116 aa) |
| | uvrA | UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (1008 aa) |
| | BVIR_1734 | Bacteriophage Lambda NinG protein. (346 aa) |
| | BVIR_1786 | Light-harvesting protein B-1015 gamma chain; One of the components of the bacteriochlorophyll-protein complex in the chromatophore membrane. (57 aa) |
| | ubiH | 2-octaprenyl-6-methoxyphenol hydroxylase. (405 aa) |
| | mcl1 | Malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (347 aa) |
| | cobQ_1 | Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (518 aa) |
| | rpmF | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (61 aa) |
| | BVIR_1865 | Hypothetical protein. (608 aa) |
| | BVIR_1869 | POTRA domain, ShlB-type. (547 aa) |
| | fhuC_1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC. (245 aa) |
| | mntB_3 | Manganese transport system membrane protein MntB. (289 aa) |
| | gatA_2 | Acylamidase. (491 aa) |
| | pdhC | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (452 aa) |
| | bfmBAB | 2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (470 aa) |
| | eno | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (427 aa) |
| | leuC1 | 3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (468 aa) |
| | xseB | Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (83 aa) |
| | fabI_1 | Enoyl-[acyl-carrier-protein] reductase [NADH] FabI. (271 aa) |
| | pdxH_1 | Pyridoxine/pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). (206 aa) |
| | BVIR_1976 | ABC-2 type transporter. (283 aa) |
| | cobQ_2 | Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (519 aa) |
| | nifK_2 | Nitrogenase molybdenum-iron protein beta chain. (460 aa) |
| | nifD_3 | Nitrogenase molybdenum-iron protein alpha chain. (508 aa) |
| | fliY_1 | Cystine-binding periplasmic protein precursor. (312 aa) |
| | ffh_1 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] (515 aa) |
| | fliY_2 | ABC transporter glutamine-binding protein GlnH precursor; Belongs to the bacterial solute-binding protein 3 family. (270 aa) |
| | artQ_1 | Putative glutamine ABC transporter permease protein GlnP. (260 aa) |
| | gltK_1 | Putative glutamine ABC transporter permease protein GlnP. (250 aa) |
| | BVIR_2042 | transposase/IS protein. (242 aa) |
| | cysNC_1 | Bifunctional enzyme CysN/CysC; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (642 aa) |
| | cysD_1 | Sulfate adenylyltransferase subunit 2. (323 aa) |
| | sir_1 | Sulfite reductase [ferredoxin]. (553 aa) |
| | cysA_2 | Sulfate/thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (398 aa) |
| | ubiE_3 | Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE. (279 aa) |
| | BVIR_2109 | Hypothetical protein. (66 aa) |
| | nrdD | Anaerobic ribonucleoside-triphosphate reductase. (673 aa) |
| | nikQ | Nickel transport protein NikQ. (264 aa) |
| | nikMN | Fused nickel transport protein NikMN. (204 aa) |
| | bigR | Biofilm growth-associated repressor. (116 aa) |
| | peb1A_2 | General L-amino acid-binding periplasmic protein AapJ precursor; Belongs to the bacterial solute-binding protein 3 family. (346 aa) |
| | ruvA | Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (205 aa) |
| | ribH1 | 6,7-dimethyl-8-ribityllumazine synthase 1; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. (167 aa) |
| | BVIR_219 | Putative metallophosphoesterase YhaO. (440 aa) |
| | ybhS | Inner membrane transport permease YbhS. (382 aa) |
| | BVIR_225 | Hypothetical protein. (269 aa) |
| | nifD_4 | Nitrogenase molybdenum-iron protein alpha chain. (500 aa) |
| | nifK_3 | Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family. (511 aa) |
| | nifD_5 | Nitrogenase molybdenum-iron protein alpha chain; Belongs to the NifD/NifK/NifE/NifN family. (524 aa) |
| | nifK_4 | Nitrogenase molybdenum-iron protein beta chain. (464 aa) |
| | omp2b | Porin omp2b precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (494 aa) |
| | pobA_1 | P-hydroxybenzoate hydroxylase. (394 aa) |
| | BVIR_2287 | Leucine rich repeat variant. (257 aa) |
| | nifA_1 | Nif-specific regulatory protein. (588 aa) |
| | gsiB | Glutathione-binding protein GsiB precursor. (530 aa) |
| | cysA_3 | Sulfate/thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (350 aa) |
| | BVIR_2311 | ATP-dependent RecD-like DNA helicase. (368 aa) |
| | BVIR_2323 | Methylmalonyl-CoA carboxyltransferase 12S subunit. (520 aa) |
| | efeU | Ferrous iron permease EfeU. (283 aa) |
| | lexA | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (230 aa) |
| | dxr | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. (404 aa) |
| | rpsB | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (332 aa) |
| | moaD | Molybdopterin synthase sulfur carrier subunit. (89 aa) |
| | uvrC | UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (687 aa) |
| | gltI | Glutamate/aspartate periplasmic-binding protein precursor. (301 aa) |
| | glnP | Putative glutamine ABC transporter permease protein GlnM. (245 aa) |
| | gltK_2 | Glutamate/aspartate transport system permease protein GltK. (230 aa) |
| | petB | Cytochrome b/c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (419 aa) |
| | hypE | Hydrogenase expression/formation protein HypE. (353 aa) |
| | hypF | Carbamoyltransferase HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide. (745 aa) |
| | hypA | Hydrogenase/urease nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. (113 aa) |
| | hoxK | Uptake hydrogenase small subunit precursor. (375 aa) |
| | potA_1 | Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily. (348 aa) |
| | gltB_1 | Ferredoxin-dependent glutamate synthase 1. (1573 aa) |
| | ubiE_4 | Demethylmenaquinone methyltransferase. (213 aa) |
| | yybR | Putative HTH-type transcriptional regulator YybR. (144 aa) |
| | phaJ_1 | (R)-specific enoyl-CoA hydratase. (184 aa) |
| | alkA | DNA-3-methyladenine glycosylase. (237 aa) |
| | cydA | Cytochrome bd-I ubiquinol oxidase subunit 1. (469 aa) |
| | BVIR_2622 | Hypothetical protein. (75 aa) |
| | sucB | Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (410 aa) |
| | sucA | 2-oxoglutarate dehydrogenase E1 component. (988 aa) |
| | sucD_1 | Succinyl-CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (294 aa) |
| | sdhC | Succinate dehydrogenase cytochrome b556 subunit. (132 aa) |
| | mcl2_2 | (3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family. (296 aa) |
| | uvrB | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] (824 aa) |
| | atpB | ATP synthase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. (249 aa) |
| | atpE | ATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (75 aa) |
| | atpX | ATP synthase subunit b 2; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (181 aa) |
| | atpF | ATP synthase subunit b precursor; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (161 aa) |
| | gcvPB | Putative glycine dehydrogenase (decarboxylating) subunit 2. (517 aa) |
| | gcvPA | Putative glycine dehydrogenase (decarboxylating) subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (455 aa) |
| | gcvH_1 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (125 aa) |
| | prsD_2 | Type I secretion system ATP-binding protein PrsD. (581 aa) |
| | phaJ_2 | (R)-specific enoyl-CoA hydratase. (152 aa) |
| | sucD_2 | Succinyl-CoA ligase [ADP-forming] subunit alpha. (906 aa) |
| | BVIR_2723 | Hypothetical protein. (96 aa) |
| | xpsD | Type II secretion system protein D precursor; Belongs to the bacterial secretin family. (497 aa) |
| | appA_2 | Oligopeptide-binding protein AppA precursor. (632 aa) |
| | appA_3 | Oligopeptide-binding protein AppA precursor. (620 aa) |
| | potA_2 | Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (388 aa) |
| | accA_1 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (341 aa) |
| | BVIR_2830 | ATP-dependent RecD-like DNA helicase. (533 aa) |
| | mobA | Mobilization protein A. (270 aa) |
| | BVIR_2882 | Hypothetical protein; Belongs to the heme-copper respiratory oxidase family. (550 aa) |
| | ilvA_1 | L-threonine dehydratase biosynthetic IlvA. (324 aa) |
| | nifA_2 | Nitrogen fixation protein VnfA. (536 aa) |
| | anfD | Nitrogenase iron-iron protein alpha chain. (522 aa) |
| | anfK | Nitrogenase iron-iron protein beta chain; Belongs to the NifD/NifK/NifE/NifN family. (480 aa) |
| | fumC | Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (466 aa) |
| | BVIR_292 | Biotin biosynthesis protein BioC. (289 aa) |
| | frdC | Fumarate reductase subunit C. (150 aa) |
| | frdD | Fumarate reductase subunit D. (121 aa) |
| | dnaX_2 | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (619 aa) |
| | potA_3 | Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily. (391 aa) |
| | cysD_2 | Sulfate adenylyltransferase subunit 2. (343 aa) |
| | cysNC_2 | Bifunctional enzyme CysN/CysC; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (639 aa) |
| | mutL_1 | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (593 aa) |
| | fabI_2 | Enoyl-[acyl-carrier-protein] reductase [NADH] FabI. (291 aa) |
| | gatA_3 | Allophanate hydrolase. (594 aa) |
| | ubiE_5 | Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (257 aa) |
| | BVIR_3185 | Hypothetical protein. (100 aa) |
| | coaBC | Coenzyme A biosynthesis bifunctional protein CoaBC; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (407 aa) |
| | BVIR_3220 | DNA polymerase III subunit delta. (344 aa) |
| | BVIR_3221 | Deoxycytidine triphosphate deaminase. (374 aa) |
| | artI | Putative ABC transporter arginine-binding protein 2 precursor. (284 aa) |
| | accD | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA. (317 aa) |
| | ruvB | Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (349 aa) |
| | BVIR_3263 | ABC-2 type transporter. (269 aa) |
| | hslV | ATP-dependent protease subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. (188 aa) |
| | hslU | ATP-dependent protease ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (446 aa) |
| | priA_1 | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (724 aa) |
| | cheR_1 | Chemotaxis protein methyltransferase Cher2. (291 aa) |
| | atpH | ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (186 aa) |
| | yscN | Putative ATP synthase YscN. (451 aa) |
| | atpA | ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. (509 aa) |
| | atpG | ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (291 aa) |
| | cheR_2 | Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (282 aa) |
| | hpf | Ribosome-associated factor Y; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (193 aa) |
| | BVIR_516 | RNA polymerase sigma-54 factor 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (511 aa) |
| | atpD | ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (479 aa) |
| | atpC | ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. (144 aa) |
| | vjbR | HTH-type quorum sensing-dependent transcriptional regulator VjbR. (241 aa) |
| | dnaN_1 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (372 aa) |
| | ubiE_1 | Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (241 aa) |
| | BVIR_567 | Sensory histidine kinase AtoS. (479 aa) |
| | bchM | Magnesium-protoporphyrin O-methyltransferase. (233 aa) |
| | puhA | Reaction center protein H chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. (258 aa) |
| | pufB | Light-harvesting protein B-1015 beta chain precursor; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (69 aa) |
| | pufA | Light-harvesting protein B-1015 alpha chain precursor; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (69 aa) |
| | pufL | Reaction center protein L chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. (274 aa) |
| | pufM | Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. (324 aa) |
| | pufC | Photosynthetic reaction center cytochrome c subunit precursor; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor. (356 aa) |
| | trmB_1 | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (246 aa) |
| | BVIR_649 | ABC-2 type transporter. (262 aa) |
| | dnaC | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (496 aa) |
| | lptG | Lipopolysaccharide export system permease protein LptG. (364 aa) |
| | BVIR_684 | Putative permease YjgP/YjgQ family protein. (390 aa) |
| | BVIR_686 | DNA polymerase III subunit chi. (152 aa) |
| | BVIR_691 | Amylo-alpha-1,6-glucosidase. (729 aa) |
| | modE_1 | Molybdenum-pterin-binding protein MopA. (132 aa) |
| | xseA | Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (499 aa) |
| | BVIR_758 | Hypothetical protein. (170 aa) |
| | BVIR_771 | Alpha-keto acid-binding periplasmic protein TakP precursor; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (363 aa) |
| | moaA_1 | Cyclic pyranopterin monophosphate synthase; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (349 aa) |
| | BVIR_796 | Alpha-keto acid-binding periplasmic protein TakP precursor; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (362 aa) |
| | rpoZ | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (130 aa) |
| | Hgd | 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (295 aa) |
| | prsD_1 | Type I secretion system ATP-binding protein PrsD. (612 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (652 aa) |
| | carA_1 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. (395 aa) |
| | BVIR_900 | Hypothetical protein. (189 aa) |
| | tdcB | L-threonine dehydratase catabolic TdcB. (334 aa) |
| | mlaE | Putative phospholipid ABC transporter permease protein MlaE. (378 aa) |
| | ubiE_2 | Demethylmenaquinone methyltransferase. (213 aa) |
