(15 nodes) Transport along microtubule network (Cordyceps fumosorosea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ISF_06386	Dynactin. (1333 aa)
	ISF_03515	Kinesin family protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1708 aa)
	ISF_04600	HSP20-like chaperone. (188 aa)
	ISF_05396	Dynein heavy chain, cytosolic (DYHC). (4347 aa)
	ISF_06139	PH domain-containing protein. (1596 aa)
	ISF_07565	Calponin-like actin-binding protein. (242 aa)
	ISF_08359	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (798 aa)
	ISF_08322	Uncharacterized protein. (264 aa)
	ISF_08958	RING finger membrane protein. (603 aa)
	ISF_09408	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures. (137 aa)
	ISF_09686	Cytoskeleton-associated protein, Gly-rich domain protein. (811 aa)
	ISF_07901	Uncharacterized protein. (708 aa)
	ISF_00165	Uncharacterized protein. (528 aa)
	ISF_00433	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (993 aa)
	ISF_00023	Cytoplasmic dynein 1 intermediate chain 2. (717 aa)

Your Current Organism:

Cordyceps fumosorosea

NCBI taxonomy Id: 1081104
Other names: C. fumosorosea ARSEF 2679, Cordyceps fumosorosea ARSEF 2679, Isaria fumosorosea ARSEF 2679

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ISF_00023	ISF_00165	A0A162JSJ8	A0A162LNF8	Cytoplasmic dynein 1 intermediate chain 2.	Uncharacterized protein.	0.484
ISF_00023	ISF_00433	A0A162JSJ8	A0A162JTG1	Cytoplasmic dynein 1 intermediate chain 2.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.750
ISF_00023	ISF_03515	A0A162JSJ8	A0A168ASP4	Cytoplasmic dynein 1 intermediate chain 2.	Kinesin family protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.718
ISF_00023	ISF_04600	A0A162JSJ8	A0A167WK22	Cytoplasmic dynein 1 intermediate chain 2.	HSP20-like chaperone.	0.702
ISF_00023	ISF_05396	A0A162JSJ8	A0A167U7N4	Cytoplasmic dynein 1 intermediate chain 2.	Dynein heavy chain, cytosolic (DYHC).	0.997
ISF_00023	ISF_06139	A0A162JSJ8	A0A167T0Q7	Cytoplasmic dynein 1 intermediate chain 2.	PH domain-containing protein.	0.688
ISF_00023	ISF_06386	A0A162JSJ8	A0A167SBE8	Cytoplasmic dynein 1 intermediate chain 2.	Dynactin.	0.979
ISF_00023	ISF_07565	A0A162JSJ8	A0A167PBQ5	Cytoplasmic dynein 1 intermediate chain 2.	Calponin-like actin-binding protein.	0.602
ISF_00023	ISF_08958	A0A162JSJ8	A0A167LLK0	Cytoplasmic dynein 1 intermediate chain 2.	RING finger membrane protein.	0.721
ISF_00023	ISF_09408	A0A162JSJ8	A0A167J1Y3	Cytoplasmic dynein 1 intermediate chain 2.	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	0.992
ISF_00023	ISF_09686	A0A162JSJ8	A0A167DYN5	Cytoplasmic dynein 1 intermediate chain 2.	Cytoskeleton-associated protein, Gly-rich domain protein.	0.751
ISF_00165	ISF_00023	A0A162LNF8	A0A162JSJ8	Uncharacterized protein.	Cytoplasmic dynein 1 intermediate chain 2.	0.484
ISF_00165	ISF_00433	A0A162LNF8	A0A162JTG1	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.768
ISF_00165	ISF_03515	A0A162LNF8	A0A168ASP4	Uncharacterized protein.	Kinesin family protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.578
ISF_00165	ISF_05396	A0A162LNF8	A0A167U7N4	Uncharacterized protein.	Dynein heavy chain, cytosolic (DYHC).	0.826
ISF_00165	ISF_06139	A0A162LNF8	A0A167T0Q7	Uncharacterized protein.	PH domain-containing protein.	0.838
ISF_00165	ISF_07565	A0A162LNF8	A0A167PBQ5	Uncharacterized protein.	Calponin-like actin-binding protein.	0.905
ISF_00165	ISF_09686	A0A162LNF8	A0A167DYN5	Uncharacterized protein.	Cytoskeleton-associated protein, Gly-rich domain protein.	0.833
ISF_00433	ISF_00023	A0A162JTG1	A0A162JSJ8	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Cytoplasmic dynein 1 intermediate chain 2.	0.750
ISF_00433	ISF_00165	A0A162JTG1	A0A162LNF8	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.768