(14 nodes) Death Receptor Signaling network (Cordyceps fumosorosea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ISF_09245	Zinc finger, RING/FYVE/PHD-type. (570 aa)
	ISF_09089	Guanine nucleotide-binding protein beta subunit-like protein. (320 aa)
	ISF_01202	Uncharacterized protein. (681 aa)
	ISF_01302	Uncharacterized protein. (796 aa)
	ISF_07006	Ubiquitin. (195 aa)
	ISF_06030	RacA. (191 aa)
	ISF_04823	BZIP domain-containing protein. (296 aa)
	ISF_03523	Uncharacterized protein. (112 aa)
	ISF_02240	Ubiquitin. (305 aa)
	ISF_02540	Protein BFR2. (551 aa)
	ISF_02052	Uncharacterized protein. (842 aa)
	ISF_01301	Uncharacterized protein. (129 aa)
	ISF_01381	Uncharacterized protein. (388 aa)
	ISF_00210	AB hydrolase-1 domain-containing protein. (397 aa)

Your Current Organism:

Cordyceps fumosorosea

NCBI taxonomy Id: 1081104
Other names: C. fumosorosea ARSEF 2679, Cordyceps fumosorosea ARSEF 2679, Isaria fumosorosea ARSEF 2679

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ISF_00210	ISF_01301	A0A162N002	A0A168D6G4	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.543
ISF_00210	ISF_01302	A0A162N002	A0A162MXI7	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.543
ISF_00210	ISF_06030	A0A162N002	A0A167SX42	AB hydrolase-1 domain-containing protein.	RacA.	0.458
ISF_01202	ISF_01301	A0A162MXD7	A0A168D6G4	Uncharacterized protein.	Uncharacterized protein.	0.434
ISF_01202	ISF_01302	A0A162MXD7	A0A162MXI7	Uncharacterized protein.	Uncharacterized protein.	0.434
ISF_01202	ISF_06030	A0A162MXD7	A0A167SX42	Uncharacterized protein.	RacA.	0.804
ISF_01301	ISF_00210	A0A168D6G4	A0A162N002	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.543
ISF_01301	ISF_01202	A0A168D6G4	A0A162MXD7	Uncharacterized protein.	Uncharacterized protein.	0.434
ISF_01301	ISF_01302	A0A168D6G4	A0A162MXI7	Uncharacterized protein.	Uncharacterized protein.	0.467
ISF_01301	ISF_01381	A0A168D6G4	A0A168D945	Uncharacterized protein.	Uncharacterized protein.	0.543
ISF_01301	ISF_02052	A0A168D6G4	A0A168CKX0	Uncharacterized protein.	Uncharacterized protein.	0.706
ISF_01301	ISF_02240	A0A168D6G4	A0A168BLC9	Uncharacterized protein.	Ubiquitin.	0.502
ISF_01301	ISF_03523	A0A168D6G4	A0A168ASV6	Uncharacterized protein.	Uncharacterized protein.	0.543
ISF_01301	ISF_04823	A0A168D6G4	A0A167VSV8	Uncharacterized protein.	BZIP domain-containing protein.	0.542
ISF_01301	ISF_06030	A0A168D6G4	A0A167SX42	Uncharacterized protein.	RacA.	0.789
ISF_01301	ISF_07006	A0A168D6G4	A0A167QM50	Uncharacterized protein.	Ubiquitin.	0.542
ISF_01302	ISF_00210	A0A162MXI7	A0A162N002	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.543
ISF_01302	ISF_01202	A0A162MXI7	A0A162MXD7	Uncharacterized protein.	Uncharacterized protein.	0.434
ISF_01302	ISF_01301	A0A162MXI7	A0A168D6G4	Uncharacterized protein.	Uncharacterized protein.	0.467
ISF_01302	ISF_01381	A0A162MXI7	A0A168D945	Uncharacterized protein.	Uncharacterized protein.	0.543