(15 nodes) CD28 dependent Vav1 pathway, and Rho GTPase-activating protein domain network (Cordyceps confragosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LEL_06709	Phox-domain containing protein. (580 aa)
	LEL_09693	CDC24 calponin. (968 aa)
	LEL_09147	Uncharacterized protein. (801 aa)
	LEL_10547	Cell division control protein 42. (195 aa)
	LEL_08350	Small GTPase superfamily. (189 aa)
	LEL_10943	Cell division control protein 42. (195 aa)
	LEL_10348	Rho GTPase activator Rga. (1088 aa)
	LEL_09966	Ankyrin repeat-containing domain protein. (687 aa)
	LEL_08222	Non-specific serine/threonine protein kinase. (823 aa)
	LEL_07144	RacA. (195 aa)
	LEL_07223	Rho GTPase-activating protein domain protein. (848 aa)
	LEL_06270	Non-specific serine/threonine protein kinase. (689 aa)
	LEL_02526	Protein RHO3. (212 aa)
	LEL_02943	Rho GTPase-activating protein domain protein. (1154 aa)
	LEL_02089	RhoGAP domain-containing protein. (1535 aa)

Your Current Organism:

Cordyceps confragosa

NCBI taxonomy Id: 1081108
Other names: C. confragosa RCEF 1005, Cordyceps confragosa RCEF 1005

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LEL_02089	LEL_02526	A0A168L0M8	A0A168IBP2	RhoGAP domain-containing protein.	Protein RHO3.	0.650
LEL_02089	LEL_02943	A0A168L0M8	A0A168IN07	RhoGAP domain-containing protein.	Rho GTPase-activating protein domain protein.	0.694
LEL_02089	LEL_06270	A0A168L0M8	A0A168GK26	RhoGAP domain-containing protein.	Non-specific serine/threonine protein kinase.	0.523
LEL_02089	LEL_06709	A0A168L0M8	A0A162ITK6	RhoGAP domain-containing protein.	Phox-domain containing protein.	0.612
LEL_02089	LEL_07144	A0A168L0M8	A0A168FGJ6	RhoGAP domain-containing protein.	RacA.	0.767
LEL_02089	LEL_07223	A0A168L0M8	A0A168FIK0	RhoGAP domain-containing protein.	Rho GTPase-activating protein domain protein.	0.688
LEL_02089	LEL_08222	A0A168L0M8	A0A168F483	RhoGAP domain-containing protein.	Non-specific serine/threonine protein kinase.	0.523
LEL_02089	LEL_08350	A0A168L0M8	A0A162N352	RhoGAP domain-containing protein.	Small GTPase superfamily.	0.650
LEL_02089	LEL_09693	A0A168L0M8	A0A162JMJ0	RhoGAP domain-containing protein.	CDC24 calponin.	0.538
LEL_02089	LEL_09966	A0A168L0M8	A0A168BI70	RhoGAP domain-containing protein.	Ankyrin repeat-containing domain protein.	0.455
LEL_02089	LEL_10348	A0A168L0M8	A0A167ZNE4	RhoGAP domain-containing protein.	Rho GTPase activator Rga.	0.994
LEL_02089	LEL_10547	A0A168L0M8	A0A162MQ07	RhoGAP domain-containing protein.	Cell division control protein 42.	0.832
LEL_02089	LEL_10943	A0A168L0M8	A0A167PQJ4	RhoGAP domain-containing protein.	Cell division control protein 42.	0.832
LEL_02526	LEL_02089	A0A168IBP2	A0A168L0M8	Protein RHO3.	RhoGAP domain-containing protein.	0.650
LEL_02526	LEL_02943	A0A168IBP2	A0A168IN07	Protein RHO3.	Rho GTPase-activating protein domain protein.	0.927
LEL_02526	LEL_06270	A0A168IBP2	A0A168GK26	Protein RHO3.	Non-specific serine/threonine protein kinase.	0.746
LEL_02526	LEL_06709	A0A168IBP2	A0A162ITK6	Protein RHO3.	Phox-domain containing protein.	0.720
LEL_02526	LEL_07144	A0A168IBP2	A0A168FGJ6	Protein RHO3.	RacA.	0.660
LEL_02526	LEL_07223	A0A168IBP2	A0A168FIK0	Protein RHO3.	Rho GTPase-activating protein domain protein.	0.840
LEL_02526	LEL_08222	A0A168IBP2	A0A168F483	Protein RHO3.	Non-specific serine/threonine protein kinase.	0.746