(13 nodes) Endoplasmic reticulum unfolded protein response network (Cordyceps confragosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LEL_04847	Glucosidase II beta subunit-like protein. (522 aa)
	LEL_01388	Vacuolar protein sorting-associated protein 74. (352 aa)
	LEL_02696	Bax Inhibitor family protein; Belongs to the BI1 family. (284 aa)
	LEL_02475	Glucose-regulated protein; Belongs to the heat shock protein 70 family. (666 aa)
	LEL_04164	Uncharacterized protein. (126 aa)
	LEL_06374	Serine/threonine-protein kinase. (1222 aa)
	LEL_07755	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (263 aa)
	LEL_08338	Clock controlled protein. (661 aa)
	LEL_08072	Heat shock protein Hsp70; Belongs to the heat shock protein 70 family. (589 aa)
	LEL_08522	Uncharacterized protein. (447 aa)
	LEL_10541	Heat shock protein 70; Belongs to the heat shock protein 70 family. (542 aa)
	LEL_01447	Ovarian tumor, otubain. (297 aa)
	LEL_07010	Protein kinase-like domain protein. (260 aa)

Your Current Organism:

Cordyceps confragosa

NCBI taxonomy Id: 1081108
Other names: C. confragosa RCEF 1005, Cordyceps confragosa RCEF 1005

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LEL_02475	LEL_04164	A0A168IAC2	A0A168H5U1	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.740
LEL_02475	LEL_04847	A0A168IAC2	A0A168HNP1	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Glucosidase II beta subunit-like protein.	0.666
LEL_02475	LEL_06374	A0A168IAC2	A0A168GMS6	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Serine/threonine-protein kinase.	0.926
LEL_02475	LEL_07010	A0A168IAC2	A0A162JXH7	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Protein kinase-like domain protein.	0.740
LEL_02475	LEL_07755	A0A168IAC2	A0A168FY72	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.911
LEL_04164	LEL_02475	A0A168H5U1	A0A168IAC2	Uncharacterized protein.	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.740
LEL_04164	LEL_08072	A0A168H5U1	A0A168F0I5	Uncharacterized protein.	Heat shock protein Hsp70; Belongs to the heat shock protein 70 family.	0.740
LEL_04164	LEL_10541	A0A168H5U1	A0A167XKP2	Uncharacterized protein.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.740
LEL_04847	LEL_02475	A0A168HNP1	A0A168IAC2	Glucosidase II beta subunit-like protein.	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.666
LEL_04847	LEL_07755	A0A168HNP1	A0A168FY72	Glucosidase II beta subunit-like protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.989
LEL_04847	LEL_08072	A0A168HNP1	A0A168F0I5	Glucosidase II beta subunit-like protein.	Heat shock protein Hsp70; Belongs to the heat shock protein 70 family.	0.666
LEL_04847	LEL_10541	A0A168HNP1	A0A167XKP2	Glucosidase II beta subunit-like protein.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.636
LEL_06374	LEL_02475	A0A168GMS6	A0A168IAC2	Serine/threonine-protein kinase.	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.926
LEL_06374	LEL_08072	A0A168GMS6	A0A168F0I5	Serine/threonine-protein kinase.	Heat shock protein Hsp70; Belongs to the heat shock protein 70 family.	0.926
LEL_06374	LEL_10541	A0A168GMS6	A0A167XKP2	Serine/threonine-protein kinase.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.919
LEL_07010	LEL_02475	A0A162JXH7	A0A168IAC2	Protein kinase-like domain protein.	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.740
LEL_07010	LEL_08072	A0A162JXH7	A0A168F0I5	Protein kinase-like domain protein.	Heat shock protein Hsp70; Belongs to the heat shock protein 70 family.	0.740
LEL_07010	LEL_10541	A0A162JXH7	A0A167XKP2	Protein kinase-like domain protein.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.740
LEL_07755	LEL_02475	A0A168FY72	A0A168IAC2	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.911
LEL_07755	LEL_04847	A0A168FY72	A0A168HNP1	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Glucosidase II beta subunit-like protein.	0.989