STRINGSTRING
KKY_2183 KKY_2183 KKY_2250 KKY_2250 KKY_1280 KKY_1280 rpoH rpoH KKY_2396 KKY_2396 KKY_3278 KKY_3278 KKY_3262 KKY_3262 KKY_2533 KKY_2533 KKY_66 KKY_66 KKY_802 KKY_802 KKY_2053 KKY_2053 rpoD rpoD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KKY_2183RNA polymerase sigma-70 factor, ECF subfamily. (398 aa)
KKY_2250RNA polymerase sigma-70 factor, ECF subfamily. (177 aa)
KKY_1280RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily. (187 aa)
rpoHRNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (292 aa)
KKY_2396Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (175 aa)
KKY_3278RNA polymerase, sigma-24 subunit, ECF subfamily protein; Belongs to the sigma-70 factor family. ECF subfamily. (163 aa)
KKY_3262Hypothetical protein. (218 aa)
KKY_2533Putative RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
KKY_66RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
KKY_802RNA polymerase sigma-70 factor, ECF subfamily. (419 aa)
KKY_2053RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa)
rpoDRNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (690 aa)
Your Current Organism:
Pelagibacterium halotolerans
NCBI taxonomy Id: 1082931
Other names: Devosia sp. B2, Hyphomicrobiaceae bacterium B2, P. halotolerans B2, Pelagibacterium halotolerans B2, Pelagibacterium halotolerans CGMCC 1.7692
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