STRINGSTRING
GNIT_2392 GNIT_2392 kbl kbl GNIT_0139 GNIT_0139 hemL hemL argD argD patB patB GNIT_0834 GNIT_0834 iscS iscS glyA glyA hisC hisC GNIT_1182 GNIT_1182 bioA bioA bioF bioF sufS sufS hisC-2 hisC-2 GNIT_1586 GNIT_1586 GNIT_1648 GNIT_1648 sufS-2 sufS-2 GNIT_1743 GNIT_1743 serC serC metB metB aspC aspC GNIT_2090 GNIT_2090 kynU kynU gcvP gcvP GNIT_2832 GNIT_2832 metY metY gadB gadB GNIT_3239 GNIT_3239 GNIT_3345 GNIT_3345
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GNIT_2392DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (399 aa)
kbl2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA. (397 aa)
GNIT_0139Methionine gamma-lyase. (432 aa)
hemLGlutamate-1-semialdehyde-2,1-aminomutase. (430 aa)
argDBifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (401 aa)
patBAminotransferase. (374 aa)
GNIT_0834Pyridoxal-dependent decarboxylase. (468 aa)
iscSCysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. (407 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (418 aa)
hisCHistidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (369 aa)
GNIT_1182Aminotransferase. (477 aa)
bioAAdenosylmethionine--8-amino-7-oxononanoate transaminase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. (426 aa)
bioF8-amino-7-oxononanoate synthase. (420 aa)
sufSSelenocysteine lyase/Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (405 aa)
hisC-2Putative aminotransferase. (388 aa)
GNIT_1586Threonine aldolase. (337 aa)
GNIT_1648Putative threonine aldolase. (343 aa)
sufS-2SufS subfamily cysteine desulfurase. (606 aa)
GNIT_1743Aminotransferase AlaT. (404 aa)
serCPhosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (363 aa)
metBO-acetylhomoserine (thiol)-lyase. (416 aa)
aspCAromatic amino acid aminotransferase. (396 aa)
GNIT_2090Cystathionine gamma-lyase. (370 aa)
kynUKynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (459 aa)
gcvPGlycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (974 aa)
GNIT_2832Methionine gamma-lyase. (422 aa)
metYO-acetylhomoserine sulfhydrylase. (429 aa)
gadBGlutamate decarboxylase putative. (540 aa)
GNIT_3239Aminotransferase, class V. (375 aa)
GNIT_3345Aminotransferase class V. (376 aa)
Your Current Organism:
Glaciecola nitratireducens
NCBI taxonomy Id: 1085623
Other names: G. nitratireducens FR1064, Glaciecola nitratireducens FR1064, Glaciecola nitratireducens str. FR1064, Glaciecola nitratireducens strain FR1064, Glaciecola sp. FR1064
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.