STRINGSTRING
rplS rplS AIT79971.1 AIT79971.1 rplU rplU rplQ rplQ rplI rplI rpsR rpsR rpsF rpsF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rplS50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (122 aa)
AIT79971.150S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
rplU50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (98 aa)
rplQ50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
rplI50S ribosomal protein L9; Binds to the 23S rRNA. (202 aa)
rpsR30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (74 aa)
rpsF30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (120 aa)
Your Current Organism:
Novosphingobium pentaromativorans
NCBI taxonomy Id: 1088721
Other names: N. pentaromativorans US6-1, Novosphingobium pentaromativorans US6-1, Novosphingobium pentaromativorans str. US6-1, Novosphingobium pentaromativorans strain US6-1, Novosphingobium sp. US6-1
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