STRINGSTRING
ABOM_012121 ABOM_012121 ABOM_011976 ABOM_011976 ABOM_011916 ABOM_011916 ABOM_011538 ABOM_011538 ABOM_011636 ABOM_011636 ABOM_011549 ABOM_011549 ABOM_011332 ABOM_011332 ABOM_011423 ABOM_011423 ABOM_011556 ABOM_011556 ABOM_010860 ABOM_010860 ABOM_010788 ABOM_010788 ABOM_010667 ABOM_010667 ABOM_010454 ABOM_010454 ABOM_010940 ABOM_010940 ABOM_010027 ABOM_010027 ABOM_010790 ABOM_010790 ABOM_010506 ABOM_010506 ABOM_009567 ABOM_009567 ABOM_010106 ABOM_010106 ABOM_009780 ABOM_009780 ABOM_010398 ABOM_010398 ABOM_010403 ABOM_010403 ABOM_010290 ABOM_010290 ABOM_010250 ABOM_010250 ABOM_010274 ABOM_010274 ABOM_010091 ABOM_010091 ABOM_010247 ABOM_010247 ABOM_009729 ABOM_009729 ABOM_009723 ABOM_009723 ABOM_009722 ABOM_009722 ABOM_009730 ABOM_009730 ABOM_009971 ABOM_009971 ABOM_009468 ABOM_009468 ABOM_010383 ABOM_010383 ABOM_009372 ABOM_009372 ABOM_008612 ABOM_008612 ABOM_009169 ABOM_009169 ABOM_009349 ABOM_009349 ABOM_009328 ABOM_009328 ABOM_009124 ABOM_009124 ABOM_009101 ABOM_009101 ABOM_009147 ABOM_009147 ABOM_008284 ABOM_008284 ABOM_009429 ABOM_009429 ABOM_008255 ABOM_008255 ABOM_009417 ABOM_009417 ABOM_008165 ABOM_008165 ABOM_008490 ABOM_008490 ABOM_008467 ABOM_008467 ABOM_008466 ABOM_008466 ABOM_008514 ABOM_008514 ABOM_008127 ABOM_008127 ABOM_008087 ABOM_008087 ABOM_008558 ABOM_008558 ABOM_007142 ABOM_007142 ABOM_006885 ABOM_006885 ABOM_007553 ABOM_007553 ABOM_006868 ABOM_006868 ABOM_007156 ABOM_007156 ABOM_007058 ABOM_007058 ABOM_006983 ABOM_006983 ABOM_007333 ABOM_007333 ABOM_007256 ABOM_007256 ABOM_006597 ABOM_006597 ABOM_006133 ABOM_006133 ABOM_007105 ABOM_007105 ABOM_007098 ABOM_007098 ABOM_006173 ABOM_006173 ABOM_006158 ABOM_006158 ABOM_006414 ABOM_006414 ABOM_006433 ABOM_006433 ABOM_007073 ABOM_007073 ABOM_006357 ABOM_006357 ABOM_006471 ABOM_006471 ABOM_005904 ABOM_005904 ABOM_005377 ABOM_005377 ABOM_005390 ABOM_005390 ABOM_006035 ABOM_006035 ABOM_005180 ABOM_005180 ABOM_005206 ABOM_005206 ABOM_005226 ABOM_005226 ABOM_005703 ABOM_005703 ABOM_005644 ABOM_005644 ABOM_004910 ABOM_004910 ABOM_004854 ABOM_004854 ABOM_005297 ABOM_005297 ABOM_005328 ABOM_005328 ABOM_005115 ABOM_005115 ABOM_004806 ABOM_004806 ABOM_003626 ABOM_003626 ABOM_003927 ABOM_003927 ABOM_004999 ABOM_004999 ABOM_004418 ABOM_004418 ABOM_003625 ABOM_003625 ABOM_004283 ABOM_004283 ABOM_003284 ABOM_003284 ABOM_002783 ABOM_002783 ABOM_002683 ABOM_002683 ABOM_002158 ABOM_002158 ABOM_003443 ABOM_003443 ABOM_002491 ABOM_002491 ABOM_002481 ABOM_002481 ABOM_002482 ABOM_002482 ABOM_003375 ABOM_003375 ABOM_002514 ABOM_002514 ABOM_003171 ABOM_003171 ABOM_002355 ABOM_002355 ABOM_003551 ABOM_003551 ABOM_001552 ABOM_001552 ABOM_001394 ABOM_001394 ABOM_001411 ABOM_001411 ABOM_001212 ABOM_001212 ABOM_001094 ABOM_001094 ABOM_001402 ABOM_001402 ABOM_001093 ABOM_001093 ABOM_000938 ABOM_000938 ABOM_001112 ABOM_001112 ABOM_001355 ABOM_001355 ABOM_001228 ABOM_001228 ABOM_000663 ABOM_000663 ABOM_001225 ABOM_001225 ABOM_000707 ABOM_000707 ABOM_001005 ABOM_001005 ABOM_000720 ABOM_000720 ABOM_000443 ABOM_000443 ABOM_000462 ABOM_000462 ABOM_000239 ABOM_000239 ABOM_000414 ABOM_000414 ABOM_000686 ABOM_000686
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ABOM_012121NUDIX domain. (182 aa)
ABOM_011976RNA polymerase II transcription factor subunit 1. (683 aa)
ABOM_011916Tau95 domain-containing protein. (331 aa)
ABOM_011538Uncharacterized protein. (60 aa)
ABOM_011636Uncharacterized protein. (219 aa)
ABOM_011549DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (324 aa)
ABOM_011332Glutaminase. (715 aa)
ABOM_011423RNA polymerase II transcription factor B subunit 3. (378 aa)
ABOM_011556DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1204 aa)
ABOM_010860DNA-directed RNA polymerase III subunit RPC8. (193 aa)
ABOM_010788Transcription initiation factor TFIID subunit beta. (374 aa)
ABOM_010667NAD dependent epimerase/dehydratase. (259 aa)
ABOM_010454RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (509 aa)
ABOM_010940Putative mRNA capping enzyme alpha subunit. (352 aa)
ABOM_010027TATA-binding protein associated factor Taf2. (1247 aa)
ABOM_010790Transcription initiation factor TFIID complex subunit. (445 aa)
ABOM_010506Uncharacterized protein. (345 aa)
ABOM_009567RNA polymerase II transcription elongation factor Rtf1p. (600 aa)
ABOM_010106Pol II transcription elongation factor subunit Cdc73. (470 aa)
ABOM_009780Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (714 aa)
ABOM_010398Cyclin; Belongs to the cyclin family. (537 aa)
ABOM_010403TATA-box-binding protein. (268 aa)
ABOM_010290Uncharacterized protein. (585 aa)
ABOM_010250Uncharacterized protein. (705 aa)
ABOM_010274DNA-directed RNA polymerase II subunit RPB3. (339 aa)
ABOM_010091Transcription factor RfeG. (228 aa)
ABOM_010247G protein-coupled receptor GprD. (415 aa)
ABOM_009729Uncharacterized protein. (284 aa)
ABOM_009723DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1377 aa)
ABOM_009722DNA-dependent RNA polymerase family protein. (319 aa)
ABOM_009730Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (142 aa)
ABOM_009971RNA polymerase II transcription factor B subunit 5. (73 aa)
ABOM_009468Transcription factor TFIIIB complex subunit Brf1. (758 aa)
ABOM_010383DNA-directed RNA polymerase III RPC4. (605 aa)
ABOM_009372FACT complex subunit spt16. (1003 aa)
ABOM_008612DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (144 aa)
ABOM_009169RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (810 aa)
ABOM_009349Transcription factor TFIIH complex subunit. (376 aa)
ABOM_009328Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (281 aa)
ABOM_009124Transcription factor TFIIIC complex subunit Tfc6. (747 aa)
ABOM_009101Transcription initiation factor IIB. (350 aa)
ABOM_009147Non-histone chromosomal protein 6. (103 aa)
ABOM_008284RNA polymerase II transcription elongation factor (Ctr9). (1298 aa)
ABOM_009429Putative DNA-directed RNA polymerase II subunit RPB11a. (125 aa)
ABOM_008255Putative CDK9. (535 aa)
ABOM_009417Kinesin family protein (KipA); Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1257 aa)
ABOM_008165Uncharacterized protein. (275 aa)
ABOM_008490RNA polymerase III transcription factor TFIIIC subunit (Tfc4). (1085 aa)
ABOM_008467C2H2 transcription factor (TFIIIA). (568 aa)
ABOM_008466DNA-directed RNA polymerases I. (159 aa)
ABOM_008514General stress response phosphoprotein phosphatase Psr1. (582 aa)
ABOM_008127RNA polymerase I subunit Rpa43. (416 aa)
ABOM_008087Putative cell cycle control protein TINC. (736 aa)
ABOM_008558Polymerase (RNA) II (DNA directed) polypeptide D. (148 aa)
ABOM_007142TFIIH basal transcription factor complex p47 subunit. (216 aa)
ABOM_006885RNA polymerase-associated protein LEO1. (470 aa)
ABOM_007553Uncharacterized protein. (272 aa)
ABOM_006868Transcription initiation factor TFIID subunit 13. (257 aa)
ABOM_007156RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (653 aa)
ABOM_007058Cyclin; Belongs to the cyclin family. (388 aa)
ABOM_006983Uncharacterized protein. (478 aa)
ABOM_007333HMG box protein. (350 aa)
ABOM_007256Putative transcription factor IIIc-like protein. (631 aa)
ABOM_006597Dual specificity phosphatase catalytic domain protein. (758 aa)
ABOM_006133DNA-directed RNA polymerases I and III subunit RPAC1. (373 aa)
ABOM_007105DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (128 aa)
ABOM_007098Transcription factor TFIIE complex alpha subunit. (442 aa)
ABOM_006173Protein kinase domain-containing protein. (694 aa)
ABOM_006158Putative TFIIH complex helicase Ssl2. (812 aa)
ABOM_006414DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1447 aa)
ABOM_006433Bromodomain associated domain protein. (348 aa)
ABOM_007073Putative RNA polymerase II transcription factor SIII (Elongin) subunit A. (382 aa)
ABOM_006357CTD kinase subunit gamma. (235 aa)
ABOM_006471Transcription initiation factor TFIID subunit. (740 aa)
ABOM_005904Trimethylguanosine synthase. (1112 aa)
ABOM_005377RNA polymerase I-specific transcription initiation factor RRN3 family protein. (701 aa)
ABOM_005390DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1218 aa)
ABOM_006035TFIIIC transcription initiation factor complex subunits Tfc3. (1865 aa)
ABOM_005180ATP-dependent RNA helicase CHL1. (826 aa)
ABOM_005206Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1423 aa)
ABOM_005226Putative transcription initiation factor TFIID subunit 12. (602 aa)
ABOM_005703Uncharacterized protein. (293 aa)
ABOM_005644Putative NAD dependent epimerase/dehydratase. (285 aa)
ABOM_004910Fatty acid repression mutant protein. (240 aa)
ABOM_004854Uncharacterized protein. (238 aa)
ABOM_005297DNA-directed RNA polymerase I polypeptide. (136 aa)
ABOM_005328mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (415 aa)
ABOM_005115Phosphoglycerate mutase family protein. (332 aa)
ABOM_004806Transcription elongation factor S-II. (304 aa)
ABOM_003626Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1050 aa)
ABOM_003927Uncharacterized protein. (287 aa)
ABOM_004999Transcription factor iws1. (427 aa)
ABOM_004418Uncharacterized protein. (142 aa)
ABOM_003625mRNA capping nucleoside-triphosphatase. (749 aa)
ABOM_004283Putative transcription initiation factor TFIID subunit 7. (482 aa)
ABOM_003284Uncharacterized protein. (274 aa)
ABOM_002783Nitroreductase family protein. (206 aa)
ABOM_002683Nitroreductase family protein. (219 aa)
ABOM_002158Uncharacterized protein. (290 aa)
ABOM_003443DNA-directed RNA polymerase III subunit RPC10. (108 aa)
ABOM_002491NAD dependent epimerase/dehydratase. (285 aa)
ABOM_002481DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1673 aa)
ABOM_002482TFIIH complex helicase Rad3. (794 aa)
ABOM_003375Allergen Asp f 4. (256 aa)
ABOM_002514DNA-directed RNA polymerases I. (214 aa)
ABOM_003171Putative NAD dependent epimerase/dehydratase. (265 aa)
ABOM_002355DNA-directed RNA polymerases I. (73 aa)
ABOM_003551RNA polymerase III transcription factor subunit. (611 aa)
ABOM_001552F-box domain-containing protein. (329 aa)
ABOM_001394Transcription initiation factor TFIID. (287 aa)
ABOM_001411Transcription factor IIA. (405 aa)
ABOM_001212Transcription factor TFIIIB component. (574 aa)
ABOM_001094DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (245 aa)
ABOM_001402DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1748 aa)
ABOM_001093Uncharacterized protein. (651 aa)
ABOM_000938mRNA cap methyltransferase. (642 aa)
ABOM_001112Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (120 aa)
ABOM_001355Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (291 aa)
ABOM_001228DNA-directed RNA polymerases I and III subunit RPAC2. (146 aa)
ABOM_000663FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (587 aa)
ABOM_001225NIF domain protein. (713 aa)
ABOM_000707Putative NAD dependent epimerase/dehydratase. (279 aa)
ABOM_001005DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1236 aa)
ABOM_000720Uncharacterized protein. (291 aa)
ABOM_000443Uncharacterized protein. (764 aa)
ABOM_000462Transcription initiation factor IIF subunit beta. (374 aa)
ABOM_000239Elongin-C; Belongs to the SKP1 family. (103 aa)
ABOM_000414Uncharacterized protein. (210 aa)
ABOM_000686rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (411 aa)
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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