(23 nodes) Formation of the Early Elongation Complex, and Transcription factor TFIIE complex network (Aspergillus bombycis)

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Your Input:
	ABOM_011976	RNA polymerase II transcription factor subunit 1. (683 aa)
	ABOM_011423	RNA polymerase II transcription factor B subunit 3. (378 aa)
	ABOM_011556	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1204 aa)
	ABOM_010454	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (509 aa)
	ABOM_009780	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (714 aa)
	ABOM_010274	DNA-directed RNA polymerase II subunit RPB3. (339 aa)
	ABOM_009730	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (142 aa)
	ABOM_009971	RNA polymerase II transcription factor B subunit 5. (73 aa)
	ABOM_009349	Transcription factor TFIIH complex subunit. (376 aa)
	ABOM_009101	Transcription initiation factor IIB. (350 aa)
	ABOM_009429	Putative DNA-directed RNA polymerase II subunit RPB11a. (125 aa)
	ABOM_009417	Kinesin family protein (KipA); Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1257 aa)
	ABOM_008466	DNA-directed RNA polymerases I. (159 aa)
	ABOM_008558	Polymerase (RNA) II (DNA directed) polypeptide D. (148 aa)
	ABOM_007142	TFIIH basal transcription factor complex p47 subunit. (216 aa)
	ABOM_007105	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (128 aa)
	ABOM_007098	Transcription factor TFIIE complex alpha subunit. (442 aa)
	ABOM_006158	Putative TFIIH complex helicase Ssl2. (812 aa)
	ABOM_002482	TFIIH complex helicase Rad3. (794 aa)
	ABOM_001411	Transcription factor IIA. (405 aa)
	ABOM_001355	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (291 aa)
	ABOM_000443	Uncharacterized protein. (764 aa)
	ABOM_000462	Transcription initiation factor IIF subunit beta. (374 aa)

Your Current Organism:

Aspergillus bombycis

NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABOM_000443	ABOM_000462	A0A1F8AGK8	A0A1F8AGT2	Uncharacterized protein.	Transcription initiation factor IIF subunit beta.	0.991
ABOM_000443	ABOM_001355	A0A1F8AGK8	A0A1F8AFJ0	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.973
ABOM_000443	ABOM_001411	A0A1F8AGK8	A0A1F8AEF3	Uncharacterized protein.	Transcription factor IIA.	0.967
ABOM_000443	ABOM_002482	A0A1F8AGK8	A0A1F8AA25	Uncharacterized protein.	TFIIH complex helicase Rad3.	0.975
ABOM_000443	ABOM_006158	A0A1F8AGK8	A0A1F8A0H5	Uncharacterized protein.	Putative TFIIH complex helicase Ssl2.	0.969
ABOM_000443	ABOM_007098	A0A1F8AGK8	A0A1F7ZZT7	Uncharacterized protein.	Transcription factor TFIIE complex alpha subunit.	0.986
ABOM_000443	ABOM_007105	A0A1F8AGK8	A0A1F7ZZQ2	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
ABOM_000443	ABOM_007142	A0A1F8AGK8	A0A1F7ZWC3	Uncharacterized protein.	TFIIH basal transcription factor complex p47 subunit.	0.969
ABOM_000443	ABOM_008466	A0A1F8AGK8	A0A1F7ZU28	Uncharacterized protein.	DNA-directed RNA polymerases I.	0.999
ABOM_000443	ABOM_008558	A0A1F8AGK8	A0A1F7ZVZ8	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.999
ABOM_000443	ABOM_009101	A0A1F8AGK8	A0A1F7ZS87	Uncharacterized protein.	Transcription initiation factor IIB.	0.987
ABOM_000443	ABOM_009349	A0A1F8AGK8	A0A1F7ZRU5	Uncharacterized protein.	Transcription factor TFIIH complex subunit.	0.969
ABOM_000443	ABOM_009417	A0A1F8AGK8	A0A1F7ZTS4	Uncharacterized protein.	Kinesin family protein (KipA); Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.928
ABOM_000443	ABOM_009429	A0A1F8AGK8	A0A1F7ZTQ8	Uncharacterized protein.	Putative DNA-directed RNA polymerase II subunit RPB11a.	0.999
ABOM_000443	ABOM_009730	A0A1F8AGK8	A0A1F7ZQB3	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.940
ABOM_000443	ABOM_009780	A0A1F8AGK8	A0A1F7ZPA5	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.992
ABOM_000443	ABOM_009971	A0A1F8AGK8	A0A1F7ZQC5	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 5.	0.863
ABOM_000443	ABOM_010274	A0A1F8AGK8	A0A1F7ZPQ1	Uncharacterized protein.	DNA-directed RNA polymerase II subunit RPB3.	0.999
ABOM_000443	ABOM_010454	A0A1F8AGK8	A0A1F7ZMF0	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.975
ABOM_000443	ABOM_011423	A0A1F8AGK8	A0A1F7ZKS2	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 3.	0.973