STRINGSTRING
ABOM_011976 ABOM_011976 ABOM_011423 ABOM_011423 ABOM_010454 ABOM_010454 ABOM_009971 ABOM_009971 ABOM_009349 ABOM_009349 ABOM_009417 ABOM_009417 ABOM_007142 ABOM_007142 ABOM_007098 ABOM_007098 ABOM_006158 ABOM_006158 ABOM_002482 ABOM_002482 ABOM_001355 ABOM_001355
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ABOM_011976RNA polymerase II transcription factor subunit 1. (683 aa)
ABOM_011423RNA polymerase II transcription factor B subunit 3. (378 aa)
ABOM_010454RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (509 aa)
ABOM_009971RNA polymerase II transcription factor B subunit 5. (73 aa)
ABOM_009349Transcription factor TFIIH complex subunit. (376 aa)
ABOM_009417Kinesin family protein (KipA); Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1257 aa)
ABOM_007142TFIIH basal transcription factor complex p47 subunit. (216 aa)
ABOM_007098Transcription factor TFIIE complex alpha subunit. (442 aa)
ABOM_006158Putative TFIIH complex helicase Ssl2. (812 aa)
ABOM_002482TFIIH complex helicase Rad3. (794 aa)
ABOM_001355Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (291 aa)
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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