STRINGSTRING
ABOM_002830 ABOM_002830 ABOM_004017 ABOM_004017 ABOM_005535 ABOM_005535 ABOM_005356 ABOM_005356 ABOM_004530 ABOM_004530 ABOM_005076 ABOM_005076 ABOM_012216 ABOM_012216 CLP1 CLP1 ABOM_010851 ABOM_010851 ABOM_008918 ABOM_008918 ABOM_009391 ABOM_009391 ABOM_008495 ABOM_008495 ABOM_007343 ABOM_007343 ABOM_007092 ABOM_007092 ABOM_006466 ABOM_006466
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ABOM_002830Polyadenylation factor subunit CstF64. (282 aa)
ABOM_004017Endoribonuclease ysh1. (869 aa)
ABOM_005535Cleavage and polyadenylation specificity factor subunit 2. (1390 aa)
ABOM_005356Heterogeneous nuclear ribonucleoprotein HRP1. (557 aa)
ABOM_004530Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (275 aa)
ABOM_005076Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (609 aa)
ABOM_012216Retinoblastoma-binding protein. (634 aa)
CLP1mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (558 aa)
ABOM_010851mRNA cleavage and polyadenylation specificity factor complex subunit. (746 aa)
ABOM_008918WD repeat protein. (375 aa)
ABOM_009391mRNA cleavage factor complex component Pcf11. (651 aa)
ABOM_008495Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (324 aa)
ABOM_007343Poly(A) polymerase pla1. (1200 aa)
ABOM_007092Polyadenylation factor subunit 2. (629 aa)
ABOM_006466mRNA 3'-end-processing protein yth1. (255 aa)
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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