13 items (Aspergillus bombycis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABOM_000912	Fumarylacetoacetase. (431 aa)
	ABOM_008876	Phenylalanine ammonia-lyase. (742 aa)
	ABOM_008377	Putative fad-dependent oxidoreductase protein. (649 aa)
	ABOM_009960	Uncharacterized protein. (340 aa)
	ABOM_011863	Putative homogentisate 1. (356 aa)
	ABOM_000076	Fumarylacetoacetate hydrolase. (928 aa)
	ABOM_000357	Fumarylacetoacetase. (445 aa)
	ABOM_000915	4-hydroxyphenylpyruvate dioxygenase. (398 aa)
	ABOM_000514	Phenylalanine ammonia-lyase. (717 aa)
	ABOM_000911	Maleylacetoacetate isomerase; Belongs to the GST superfamily. (233 aa)
	ABOM_002831	Phenylalanine ammonia-lyase. (720 aa)
	ABOM_006423	Phenylalanine ammonia-lyase; Belongs to the PAL/histidase family. (1218 aa)
	ABOM_000913	Homogentisate 1. (449 aa)

Your Current Organism:

Aspergillus bombycis

NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABOM_000076	ABOM_000911	A0A1F8AI92	A0A1F8AFJ2	Fumarylacetoacetate hydrolase.	Maleylacetoacetate isomerase; Belongs to the GST superfamily.	0.692
ABOM_000076	ABOM_000913	A0A1F8AI92	A0A1F8AFC7	Fumarylacetoacetate hydrolase.	Homogentisate 1.	0.754
ABOM_000076	ABOM_000915	A0A1F8AI92	A0A1F8AGI9	Fumarylacetoacetate hydrolase.	4-hydroxyphenylpyruvate dioxygenase.	0.623
ABOM_000076	ABOM_009960	A0A1F8AI92	A0A1F7ZQE7	Fumarylacetoacetate hydrolase.	Uncharacterized protein.	0.692
ABOM_000076	ABOM_011863	A0A1F8AI92	A0A1F7ZJ82	Fumarylacetoacetate hydrolase.	Putative homogentisate 1.	0.694
ABOM_000357	ABOM_000911	A0A1F8AI85	A0A1F8AFJ2	Fumarylacetoacetase.	Maleylacetoacetate isomerase; Belongs to the GST superfamily.	0.801
ABOM_000357	ABOM_000913	A0A1F8AI85	A0A1F8AFC7	Fumarylacetoacetase.	Homogentisate 1.	0.884
ABOM_000357	ABOM_000915	A0A1F8AI85	A0A1F8AGI9	Fumarylacetoacetase.	4-hydroxyphenylpyruvate dioxygenase.	0.718
ABOM_000357	ABOM_009960	A0A1F8AI85	A0A1F7ZQE7	Fumarylacetoacetase.	Uncharacterized protein.	0.692
ABOM_000357	ABOM_011863	A0A1F8AI85	A0A1F7ZJ82	Fumarylacetoacetase.	Putative homogentisate 1.	0.873
ABOM_000514	ABOM_006423	A0A1F8AG74	A0A1F8A0T1	Phenylalanine ammonia-lyase.	Phenylalanine ammonia-lyase; Belongs to the PAL/histidase family.	0.653
ABOM_000911	ABOM_000076	A0A1F8AFJ2	A0A1F8AI92	Maleylacetoacetate isomerase; Belongs to the GST superfamily.	Fumarylacetoacetate hydrolase.	0.692
ABOM_000911	ABOM_000357	A0A1F8AFJ2	A0A1F8AI85	Maleylacetoacetate isomerase; Belongs to the GST superfamily.	Fumarylacetoacetase.	0.801
ABOM_000911	ABOM_000912	A0A1F8AFJ2	A0A1F8AFF8	Maleylacetoacetate isomerase; Belongs to the GST superfamily.	Fumarylacetoacetase.	0.972
ABOM_000911	ABOM_000913	A0A1F8AFJ2	A0A1F8AFC7	Maleylacetoacetate isomerase; Belongs to the GST superfamily.	Homogentisate 1.	0.965
ABOM_000911	ABOM_000915	A0A1F8AFJ2	A0A1F8AGI9	Maleylacetoacetate isomerase; Belongs to the GST superfamily.	4-hydroxyphenylpyruvate dioxygenase.	0.559
ABOM_000911	ABOM_008377	A0A1F8AFJ2	A0A1F7ZSF9	Maleylacetoacetate isomerase; Belongs to the GST superfamily.	Putative fad-dependent oxidoreductase protein.	0.692
ABOM_000911	ABOM_011863	A0A1F8AFJ2	A0A1F7ZJ82	Maleylacetoacetate isomerase; Belongs to the GST superfamily.	Putative homogentisate 1.	0.959
ABOM_000912	ABOM_000911	A0A1F8AFF8	A0A1F8AFJ2	Fumarylacetoacetase.	Maleylacetoacetate isomerase; Belongs to the GST superfamily.	0.972
ABOM_000912	ABOM_000913	A0A1F8AFF8	A0A1F8AFC7	Fumarylacetoacetase.	Homogentisate 1.	0.940