53 items (Aspergillus bombycis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABOM_004971	Mitochondrial 37S ribosomal protein YmS16. (121 aa)
	ABOM_012252	Uncharacterized protein. (88 aa)
	ABOM_012259	Uncharacterized protein. (88 aa)
	ABOM_012206	Uncharacterized protein. (315 aa)
	ABOM_011300	Ribosomal protein S15. (304 aa)
	ABOM_011179	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (139 aa)
	ABOM_010611	Ribosomal_L18_c domain-containing protein; Belongs to the glycosyl hydrolase 31 family. (1062 aa)
	ABOM_011421	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (560 aa)
	ABOM_011004	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (160 aa)
	ABOM_010013	Ribosome biogenesis protein. (331 aa)
	ABOM_010905	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (150 aa)
	ABOM_010370	rRNA biogenesis protein RRP5. (1832 aa)
	ABOM_008745	Uncharacterized protein. (128 aa)
	ABOM_008287	RNA processing factor 1. (431 aa)
	ABOM_008266	Ribosomal_L23eN domain-containing protein. (154 aa)
	ABOM_009591	Uncharacterized protein. (312 aa)
	ABOM_008169	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (155 aa)
	ABOM_007499	Ribosome biogenesis protein Ssf2. (448 aa)
	ABOM_008509	Putative pre-rRNA processing protein Mrd1. (833 aa)
	ABOM_008473	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
	ABOM_008115	RRP7 superfamily domain-containing protein. (310 aa)
	ABOM_006878	Glutaredoxin domain-containing protein. (475 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (784 aa)
	ABOM_007822	Mitochondrial 54S ribosomal protein YmL19; Belongs to the universal ribosomal protein uL11 family. (147 aa)
	ABOM_008798	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (214 aa)
	ABOM_007308	Putative 37S ribosomal protein S11. (235 aa)
	ABOM_007055	Mitochondrial 37S ribosomal protein NAM9. (456 aa)
	ABOM_006974	Ribosomal_L2_C domain-containing protein. (254 aa)
	ABOM_007422	Uncharacterized protein. (119 aa)
	ABOM_007104	Mitochondrial 54S ribosomal protein YmL38/YmL34; Belongs to the universal ribosomal protein uL14 family. (131 aa)
	ABOM_005842	Mitochondrial 54S ribosomal protein YmL16; Belongs to the universal ribosomal protein uL6 family. (253 aa)
	ABOM_007085	Putative U3 small nucleolar ribonucleoprotein subunit (Imp3). (188 aa)
	ABOM_005415	F-box domain protein. (357 aa)
	ABOM_006346	Mitochondrial 54S ribosomal protein YmL47; Belongs to the universal ribosomal protein uL16 family. (231 aa)
	ABOM_005414	Ribosome biogenesis protein BRX1. (364 aa)
	ABOM_005373	rRNA processing protein. (313 aa)
	ABOM_005218	RNA processing protein Emg1. (262 aa)
	ABOM_006007	Uncharacterized protein. (312 aa)
	ABOM_004734	Uncharacterized protein. (261 aa)
	ABOM_004756	Uncharacterized protein. (105 aa)
	ABOM_004733	Uncharacterized protein. (128 aa)
	ABOM_004545	Uncharacterized protein. (324 aa)
	ABOM_004749	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (261 aa)
	ABOM_004735	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (193 aa)
	ABOM_003709	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (176 aa)
	ABOM_002395	U3 small nucleolar ribonucleoprotein IMP4. (299 aa)
	ABOM_002978	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (247 aa)
	ABOM_003170	Uncharacterized protein. (505 aa)
	ABOM_001334	Uncharacterized protein. (214 aa)
	ABOM_000942	Uncharacterized protein. (239 aa)
	ABOM_000763	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	ABOM_000248	Uncharacterized protein. (187 aa)
	ABOM_000296	Uncharacterized protein. (321 aa)

Your Current Organism:

Aspergillus bombycis

NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABOM_000248	ABOM_004735	A0A1F8AHK9	A0A1F8A4S4	Uncharacterized protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.710
ABOM_000248	ABOM_007055	A0A1F8AHK9	A0A1F7ZY59	Uncharacterized protein.	Mitochondrial 37S ribosomal protein NAM9.	0.710
ABOM_000248	ABOM_007085	A0A1F8AHK9	A0A1F8A0K0	Uncharacterized protein.	Putative U3 small nucleolar ribonucleoprotein subunit (Imp3).	0.711
ABOM_000248	ABOM_007308	A0A1F8AHK9	A0A1F7ZXC7	Uncharacterized protein.	Putative 37S ribosomal protein S11.	0.659
ABOM_000248	ABOM_008745	A0A1F8AHK9	A0A1F7ZQ79	Uncharacterized protein.	Uncharacterized protein.	0.811
ABOM_000296	ABOM_000763	A0A1F8AIA6	A0A1F8AH92	Uncharacterized protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.918
ABOM_000296	ABOM_001334	A0A1F8AIA6	A0A1F8AEB4	Uncharacterized protein.	Uncharacterized protein.	0.901
ABOM_000296	ABOM_002978	A0A1F8AIA6	A0A1F8AAQ8	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.909
ABOM_000296	ABOM_003170	A0A1F8AIA6	A0A1F8AB32	Uncharacterized protein.	Uncharacterized protein.	0.906
ABOM_000296	ABOM_003709	A0A1F8AIA6	A0A1F8A5Z8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.958
ABOM_000296	ABOM_004733	A0A1F8AIA6	A0A1F8A3U6	Uncharacterized protein.	Uncharacterized protein.	0.883
ABOM_000296	ABOM_004734	A0A1F8AIA6	A0A1F8A3R2	Uncharacterized protein.	Uncharacterized protein.	0.883
ABOM_000296	ABOM_004735	A0A1F8AIA6	A0A1F8A4S4	Uncharacterized protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.881
ABOM_000296	ABOM_004749	A0A1F8AIA6	A0A1F8A4S2	Uncharacterized protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.867
ABOM_000296	ABOM_004756	A0A1F8AIA6	A0A1F8A3R5	Uncharacterized protein.	Uncharacterized protein.	0.883
ABOM_000296	ABOM_004971	A0A1F8AIA6	A0A1F8A502	Uncharacterized protein.	Mitochondrial 37S ribosomal protein YmS16.	0.921
ABOM_000296	ABOM_005414	A0A1F8AIA6	A0A1F8A1X1	Uncharacterized protein.	Ribosome biogenesis protein BRX1.	0.592
ABOM_000296	ABOM_005415	A0A1F8AIA6	A0A1F8A1S7	Uncharacterized protein.	F-box domain protein.	0.592
ABOM_000296	ABOM_005842	A0A1F8AIA6	A0A1F8A0E9	Uncharacterized protein.	Mitochondrial 54S ribosomal protein YmL16; Belongs to the universal ribosomal protein uL6 family.	0.925
ABOM_000296	ABOM_006346	A0A1F8AIA6	A0A1F8A1W6	Uncharacterized protein.	Mitochondrial 54S ribosomal protein YmL47; Belongs to the universal ribosomal protein uL16 family.	0.906