(28 nodes) Regulation of protein catabolic process network (Aspergillus bombycis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABOM_010177	Peptidyl-tRNA hydrolase 2. (204 aa)
	ABOM_010178	Uncharacterized protein. (250 aa)
	ABOM_009239	Proteasome regulatory particle subunit Rpt4; Belongs to the AAA ATPase family. (393 aa)
	INT6	Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (451 aa)
	ABOM_009172	Proteasome regulatory particle subunit Rpt3; Belongs to the AAA ATPase family. (415 aa)
	ABOM_008570	Oxidoreductase. (644 aa)
	ABOM_007506	Proteasome regulatory particle subunit Rpt5; Belongs to the AAA ATPase family. (462 aa)
	ABOM_007836	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (913 aa)
	ABOM_005970	Fizzy-related protein. (608 aa)
	ABOM_006890	DUF1000 domain protein. (143 aa)
	ABOM_007303	NEFA-interacting nuclear protein NIP30. (264 aa)
	ABOM_006197	Putative lysophospholipase. (556 aa)
	ABOM_005228	Proteasome regulatory particle subunit (RpnC). (645 aa)
	ABOM_004815	Proteasome regulatory particle subunit Rpt1; Belongs to the AAA ATPase family. (439 aa)
	ABOM_003631	Uncharacterized protein. (340 aa)
	ABOM_003629	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (1136 aa)
	ABOM_004193	Mutt/nudix hydrolase. (175 aa)
	ABOM_004199	M protein repeat protein. (861 aa)
	ABOM_003461	RBR-type E3 ubiquitin transferase. (223 aa)
	ABOM_003480	Ubiquitin carboxyl-terminal hydrolase. (571 aa)
	ABOM_002362	NUDIX domain; Belongs to the Nudix hydrolase family. (161 aa)
	ABOM_001287	RBR-type E3 ubiquitin transferase. (624 aa)
	ABOM_001174	RBR-type E3 ubiquitin transferase. (618 aa)
	ABOM_001057	WD repeat protein. (1058 aa)
	ABOM_001410	WD repeat-containing protein slp1. (623 aa)
	ABOM_001233	Uncharacterized protein. (394 aa)
	ABOM_010189	WD domain protein. (864 aa)
	ABOM_010810	Proteasome regulatory particle subunit Rpt6; Belongs to the AAA ATPase family. (389 aa)

Your Current Organism:

Aspergillus bombycis

NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABOM_001057	ABOM_001410	A0A1F8AEP1	A0A1F8AF87	WD repeat protein.	WD repeat-containing protein slp1.	0.639
ABOM_001057	ABOM_002362	A0A1F8AEP1	A0A1F8ABI7	WD repeat protein.	NUDIX domain; Belongs to the Nudix hydrolase family.	0.431
ABOM_001057	ABOM_003480	A0A1F8AEP1	A0A1F8A9J3	WD repeat protein.	Ubiquitin carboxyl-terminal hydrolase.	0.998
ABOM_001057	ABOM_003629	A0A1F8AEP1	A0A1F8A5N8	WD repeat protein.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
ABOM_001057	ABOM_004193	A0A1F8AEP1	A0A1F8A732	WD repeat protein.	Mutt/nudix hydrolase.	0.431
ABOM_001057	ABOM_004815	A0A1F8AEP1	A0A1F8A3Y3	WD repeat protein.	Proteasome regulatory particle subunit Rpt1; Belongs to the AAA ATPase family.	0.999
ABOM_001057	ABOM_005228	A0A1F8AEP1	A0A1F8A2M2	WD repeat protein.	Proteasome regulatory particle subunit (RpnC).	0.881
ABOM_001057	ABOM_005970	A0A1F8AEP1	A0A1F7ZWU9	WD repeat protein.	Fizzy-related protein.	0.639
ABOM_001057	ABOM_007506	A0A1F8AEP1	A0A1F7ZTW7	WD repeat protein.	Proteasome regulatory particle subunit Rpt5; Belongs to the AAA ATPase family.	0.999
ABOM_001057	ABOM_007836	A0A1F8AEP1	A0A1F7ZW03	WD repeat protein.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
ABOM_001057	ABOM_009172	A0A1F8AEP1	A0A1F7ZRV7	WD repeat protein.	Proteasome regulatory particle subunit Rpt3; Belongs to the AAA ATPase family.	0.999
ABOM_001057	ABOM_009239	A0A1F8AEP1	A0A1F7ZQQ1	WD repeat protein.	Proteasome regulatory particle subunit Rpt4; Belongs to the AAA ATPase family.	0.999
ABOM_001057	ABOM_010189	A0A1F8AEP1	A0A1F7ZNR7	WD repeat protein.	WD domain protein.	0.639
ABOM_001057	ABOM_010810	A0A1F8AEP1	A0A1F7ZLR3	WD repeat protein.	Proteasome regulatory particle subunit Rpt6; Belongs to the AAA ATPase family.	0.999
ABOM_001174	ABOM_001233	A0A1F8AEM5	A0A1F8AG39	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.451
ABOM_001174	ABOM_001287	A0A1F8AEM5	A0A1F8AE92	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.625
ABOM_001174	ABOM_003461	A0A1F8AEM5	A0A1F8A9E0	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.451
ABOM_001174	ABOM_003631	A0A1F8AEM5	A0A1F8A5L4	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.451
ABOM_001233	ABOM_001174	A0A1F8AG39	A0A1F8AEM5	Uncharacterized protein.	RBR-type E3 ubiquitin transferase.	0.451
ABOM_001287	ABOM_001174	A0A1F8AE92	A0A1F8AEM5	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.625