(20 nodes) ncRNA transcription network (Aspergillus bombycis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABOM_003333	MYB DNA-binding domain protein. (984 aa)
	ABOM_010860	DNA-directed RNA polymerase III subunit RPC8. (193 aa)
	ABOM_000632	Uncharacterized protein. (728 aa)
	ABOM_001005	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1236 aa)
	ABOM_010941	Hexose transporter protein. (234 aa)
	ABOM_009567	RNA polymerase II transcription elongation factor Rtf1p. (600 aa)
	ABOM_009677	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (355 aa)
	ABOM_008490	RNA polymerase III transcription factor TFIIIC subunit (Tfc4). (1085 aa)
	ABOM_008466	DNA-directed RNA polymerases I. (159 aa)
	ABOM_006913	Uncharacterized protein. (986 aa)
	ABOM_006983	Uncharacterized protein. (478 aa)
	ABOM_006545	TBP associated factor (Mot1). (1901 aa)
	ABOM_005429	SWIB/MDM2 domain protein. (276 aa)
	ABOM_000995	DNA polymerase V. (985 aa)
	ABOM_001228	DNA-directed RNA polymerases I and III subunit RPAC2. (146 aa)
	ABOM_001094	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (245 aa)
	ABOM_001235	Histone H3-like centromeric protein cse-4. (182 aa)
	ABOM_002355	DNA-directed RNA polymerases I. (73 aa)
	ABOM_002473	Histone H3; Belongs to the histone H3 family. (136 aa)
	ABOM_006035	TFIIIC transcription initiation factor complex subunits Tfc3. (1865 aa)

Your Current Organism:

Aspergillus bombycis

NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABOM_000995	ABOM_001005	A0A1F8AFL4	A0A1F8AGD1	DNA polymerase V.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.964
ABOM_000995	ABOM_001235	A0A1F8AFL4	A0A1F8AES9	DNA polymerase V.	Histone H3-like centromeric protein cse-4.	0.695
ABOM_000995	ABOM_002355	A0A1F8AFL4	A0A1F8ABN5	DNA polymerase V.	DNA-directed RNA polymerases I.	0.651
ABOM_000995	ABOM_002473	A0A1F8AFL4	A0A1F8AA48	DNA polymerase V.	Histone H3; Belongs to the histone H3 family.	0.695
ABOM_000995	ABOM_006983	A0A1F8AFL4	A0A1F7ZYB2	DNA polymerase V.	Uncharacterized protein.	0.865
ABOM_000995	ABOM_008466	A0A1F8AFL4	A0A1F7ZU28	DNA polymerase V.	DNA-directed RNA polymerases I.	0.651
ABOM_001005	ABOM_000995	A0A1F8AGD1	A0A1F8AFL4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA polymerase V.	0.964
ABOM_001005	ABOM_001094	A0A1F8AGD1	A0A1F8AEX6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.907
ABOM_001005	ABOM_001228	A0A1F8AGD1	A0A1F8AFK7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I and III subunit RPAC2.	0.995
ABOM_001005	ABOM_001235	A0A1F8AGD1	A0A1F8AES9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Histone H3-like centromeric protein cse-4.	0.797
ABOM_001005	ABOM_002355	A0A1F8AGD1	A0A1F8ABN5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I.	0.999
ABOM_001005	ABOM_002473	A0A1F8AGD1	A0A1F8AA48	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Histone H3; Belongs to the histone H3 family.	0.797
ABOM_001005	ABOM_006913	A0A1F8AGD1	A0A1F7ZXI2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.625
ABOM_001005	ABOM_006983	A0A1F8AGD1	A0A1F7ZYB2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
ABOM_001005	ABOM_008466	A0A1F8AGD1	A0A1F7ZU28	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I.	0.999
ABOM_001005	ABOM_008490	A0A1F8AGD1	A0A1F7ZU18	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase III transcription factor TFIIIC subunit (Tfc4).	0.734
ABOM_001005	ABOM_009567	A0A1F8AGD1	A0A1F7ZP21	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II transcription elongation factor Rtf1p.	0.839
ABOM_001005	ABOM_010860	A0A1F8AGD1	A0A1F7ZLL4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC8.	0.972
ABOM_001094	ABOM_001005	A0A1F8AEX6	A0A1F8AGD1	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.907
ABOM_001094	ABOM_001228	A0A1F8AEX6	A0A1F8AFK7	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	DNA-directed RNA polymerases I and III subunit RPAC2.	0.984