(14 nodes) General transcription initiation factor binding network (Aspergillus bombycis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABOM_009468	Transcription factor TFIIIB complex subunit Brf1. (758 aa)
	ABOM_011538	Uncharacterized protein. (60 aa)
	ABOM_009780	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (714 aa)
	ABOM_009729	Uncharacterized protein. (284 aa)
	ABOM_009730	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (142 aa)
	ABOM_010101	Putative transcription factor (SPT8). (651 aa)
	ABOM_009101	Transcription initiation factor IIB. (350 aa)
	ABOM_006913	Uncharacterized protein. (986 aa)
	ABOM_006545	TBP associated factor (Mot1). (1901 aa)
	ABOM_005904	Trimethylguanosine synthase. (1112 aa)
	ABOM_005226	Putative transcription initiation factor TFIID subunit 12. (602 aa)
	ABOM_001212	Transcription factor TFIIIB component. (574 aa)
	ABOM_000258	Uncharacterized protein. (301 aa)
	ABOM_000247	Cullin binding protein CanA. (1036 aa)

Your Current Organism:

Aspergillus bombycis

NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABOM_000247	ABOM_000258	A0A1F8AHK3	A0A1F8AH93	Cullin binding protein CanA.	Uncharacterized protein.	0.967
ABOM_000258	ABOM_000247	A0A1F8AH93	A0A1F8AHK3	Uncharacterized protein.	Cullin binding protein CanA.	0.967
ABOM_001212	ABOM_005904	A0A1F8AEH3	A0A1F8A1H8	Transcription factor TFIIIB component.	Trimethylguanosine synthase.	0.491
ABOM_001212	ABOM_006545	A0A1F8AEH3	A0A1F7ZZU5	Transcription factor TFIIIB component.	TBP associated factor (Mot1).	0.645
ABOM_001212	ABOM_009101	A0A1F8AEH3	A0A1F7ZS87	Transcription factor TFIIIB component.	Transcription initiation factor IIB.	0.467
ABOM_001212	ABOM_009468	A0A1F8AEH3	A0A1F7ZQJ4	Transcription factor TFIIIB component.	Transcription factor TFIIIB complex subunit Brf1.	0.999
ABOM_005226	ABOM_005904	A0A1F8A2N2	A0A1F8A1H8	Putative transcription initiation factor TFIID subunit 12.	Trimethylguanosine synthase.	0.999
ABOM_005226	ABOM_006545	A0A1F8A2N2	A0A1F7ZZU5	Putative transcription initiation factor TFIID subunit 12.	TBP associated factor (Mot1).	0.622
ABOM_005226	ABOM_006913	A0A1F8A2N2	A0A1F7ZXI2	Putative transcription initiation factor TFIID subunit 12.	Uncharacterized protein.	0.452
ABOM_005226	ABOM_009101	A0A1F8A2N2	A0A1F7ZS87	Putative transcription initiation factor TFIID subunit 12.	Transcription initiation factor IIB.	0.964
ABOM_005226	ABOM_009729	A0A1F8A2N2	A0A1F7ZQ89	Putative transcription initiation factor TFIID subunit 12.	Uncharacterized protein.	0.885
ABOM_005226	ABOM_009730	A0A1F8A2N2	A0A1F7ZQB3	Putative transcription initiation factor TFIID subunit 12.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.885
ABOM_005226	ABOM_009780	A0A1F8A2N2	A0A1F7ZPA5	Putative transcription initiation factor TFIID subunit 12.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.903
ABOM_005226	ABOM_010101	A0A1F8A2N2	A0A1F7ZQV2	Putative transcription initiation factor TFIID subunit 12.	Putative transcription factor (SPT8).	0.898
ABOM_005226	ABOM_011538	A0A1F8A2N2	A0A1F7ZJK2	Putative transcription initiation factor TFIID subunit 12.	Uncharacterized protein.	0.870
ABOM_005904	ABOM_001212	A0A1F8A1H8	A0A1F8AEH3	Trimethylguanosine synthase.	Transcription factor TFIIIB component.	0.491
ABOM_005904	ABOM_005226	A0A1F8A1H8	A0A1F8A2N2	Trimethylguanosine synthase.	Putative transcription initiation factor TFIID subunit 12.	0.999
ABOM_005904	ABOM_006545	A0A1F8A1H8	A0A1F7ZZU5	Trimethylguanosine synthase.	TBP associated factor (Mot1).	0.542
ABOM_005904	ABOM_009101	A0A1F8A1H8	A0A1F7ZS87	Trimethylguanosine synthase.	Transcription initiation factor IIB.	0.983
ABOM_005904	ABOM_009729	A0A1F8A1H8	A0A1F7ZQ89	Trimethylguanosine synthase.	Uncharacterized protein.	0.891