STRINGSTRING
ABOM_012216 ABOM_012216 ABOM_011263 ABOM_011263 ABOM_010851 ABOM_010851 ABOM_010046 ABOM_010046 ABOM_009391 ABOM_009391 ABOM_008536 ABOM_008536 ABOM_007092 ABOM_007092 ABOM_006466 ABOM_006466 ABOM_005535 ABOM_005535 ABOM_005715 ABOM_005715 ABOM_005356 ABOM_005356 ABOM_004741 ABOM_004741 ABOM_004530 ABOM_004530 ABOM_002830 ABOM_002830 ABOM_004017 ABOM_004017
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ABOM_012216Retinoblastoma-binding protein. (634 aa)
ABOM_011263Protein cft1. (1388 aa)
ABOM_010851mRNA cleavage and polyadenylation specificity factor complex subunit. (746 aa)
ABOM_010046mRNA 3'-end-processing protein rna14. (1014 aa)
ABOM_009391mRNA cleavage factor complex component Pcf11. (651 aa)
ABOM_008536RNA polymerase II subunit A C-terminal domain phosphatase ssu72. (290 aa)
ABOM_007092Polyadenylation factor subunit 2. (629 aa)
ABOM_006466mRNA 3'-end-processing protein yth1. (255 aa)
ABOM_005535Cleavage and polyadenylation specificity factor subunit 2. (1390 aa)
ABOM_005715Uncharacterized protein. (257 aa)
ABOM_005356Heterogeneous nuclear ribonucleoprotein HRP1. (557 aa)
ABOM_004741RRM domain protein. (409 aa)
ABOM_004530Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (275 aa)
ABOM_002830Polyadenylation factor subunit CstF64. (282 aa)
ABOM_004017Endoribonuclease ysh1. (869 aa)
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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