STRINGSTRING
ABOM_001392 ABOM_001392 ABOM_001199 ABOM_001199 ABOM_001226 ABOM_001226 ABOM_001230 ABOM_001230 ABOM_005365 ABOM_005365 ABOM_005419 ABOM_005419 ABOM_005415 ABOM_005415 ABOM_005161 ABOM_005161 ABOM_003727 ABOM_003727 ABOM_004412 ABOM_004412 ABOM_004569 ABOM_004569 ABOM_005157 ABOM_005157 ABOM_005267 ABOM_005267 ABOM_011963 ABOM_011963 ABOM_011962 ABOM_011962 ABOM_010852 ABOM_010852 ABOM_011297 ABOM_011297 ABOM_011150 ABOM_011150 ABOM_000850 ABOM_000850 ABOM_001000 ABOM_001000 ABOM_001330 ABOM_001330 ABOM_001171 ABOM_001171 ABOM_000456 ABOM_000456 ABOM_000318 ABOM_000318 ABOM_011650 ABOM_011650 NAT10 NAT10 ABOM_007085 ABOM_007085 ABOM_006181 ABOM_006181 ABOM_006956 ABOM_006956 ABOM_007201 ABOM_007201 ABOM_007028 ABOM_007028 ABOM_007835 ABOM_007835 ABOM_008670 ABOM_008670 ABOM_008115 ABOM_008115 ABOM_008473 ABOM_008473 ABOM_007489 ABOM_007489 ABOM_009704 ABOM_009704 ABOM_012055 ABOM_012055 ABOM_009677 ABOM_009677 ABOM_010258 ABOM_010258 ABOM_009895 ABOM_009895 ABOM_010130 ABOM_010130 ABOM_010370 ABOM_010370 SPB1 SPB1 ABOM_010259 ABOM_010259 ABOM_010055 ABOM_010055 ABOM_010688 ABOM_010688 ABOM_009787 ABOM_009787 ABOM_009769 ABOM_009769 ABOM_010124 ABOM_010124 ABOM_010188 ABOM_010188 ABOM_010013 ABOM_010013 ABOM_010866 ABOM_010866 ABOM_011775 ABOM_011775 ABOM_011173 ABOM_011173 ABOM_007328 ABOM_007328 ABOM_006870 ABOM_006870 ABOM_008566 ABOM_008566 ABOM_007183 ABOM_007183 ABOM_011343 ABOM_011343 ABOM_010796 ABOM_010796 ABOM_012062 ABOM_012062 ABOM_005537 ABOM_005537 ABOM_006272 ABOM_006272 ABOM_005170 ABOM_005170 ABOM_005258 ABOM_005258 ABOM_005342 ABOM_005342 ABOM_012244 ABOM_012244 ABOM_012014 ABOM_012014 ABOM_003815 ABOM_003815 ABOM_005373 ABOM_005373 ABOM_005414 ABOM_005414 ABOM_003733 ABOM_003733 ABOM_004191 ABOM_004191 ABOM_004161 ABOM_004161 ABOM_004184 ABOM_004184 ABOM_002395 ABOM_002395 ABOM_003049 ABOM_003049 ABOM_004037 ABOM_004037 ABOM_002269 ABOM_002269 ABOM_004093 ABOM_004093 ABOM_004097 ABOM_004097
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ABOM_001392U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (287 aa)
ABOM_001199DEAH-box RNA helicase (Dhr1). (1147 aa)
ABOM_001226rRNA biogenesis protein rrp36. (349 aa)
ABOM_001230Uncharacterized protein. (190 aa)
ABOM_005365Small nucleolar ribonucleoprotein complex subunit Dip2. (956 aa)
ABOM_005419Uncharacterized protein. (177 aa)
ABOM_005415F-box domain protein. (357 aa)
ABOM_005161Putative ribosome assembly protein Noc2. (779 aa)
ABOM_003727Uncharacterized protein. (515 aa)
ABOM_004412RNA helicase. (595 aa)
ABOM_004569Zn(II)2Cys6 transcription factor. (736 aa)
ABOM_005157ATP-dependent RNA helicase rok1. (727 aa)
ABOM_005267RNA binding protein. (328 aa)
ABOM_011963Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (687 aa)
ABOM_01196260S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (185 aa)
ABOM_010852Nucleolar protein 12. (525 aa)
ABOM_011297RNA helicase. (638 aa)
ABOM_011150Ribosome biogenesis protein RLP24. (188 aa)
ABOM_000850WD repeat protein. (720 aa)
ABOM_001000HEAT repeat protein (DRIM). (2614 aa)
ABOM_001330Putative C2H2 finger domain protein. (111 aa)
ABOM_001171Protein MAK16; Belongs to the MAK16 family. (326 aa)
ABOM_000456Ribosome biogenesis protein Noc4. (550 aa)
ABOM_000318RNA-3'-phosphate cyclase family protein. (402 aa)
ABOM_011650Putative RING finger domain protein (Rnf10). (644 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1069 aa)
ABOM_007085Putative U3 small nucleolar ribonucleoprotein subunit (Imp3). (188 aa)
ABOM_006181Periodic tryptophan protein 2. (900 aa)
ABOM_006956Low-temperature viability protein ltv1. (486 aa)
ABOM_007201Sas10/Utp3 family protein. (648 aa)
ABOM_007028Ribosomal protein S23 (S12); Belongs to the universal ribosomal protein uS12 family. (145 aa)
ABOM_007835Serine/threonine-protein kinase rio2. (403 aa)
ABOM_008670Uncharacterized protein. (836 aa)
ABOM_008115RRP7 superfamily domain-containing protein. (310 aa)
ABOM_00847360S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
ABOM_007489Small nucleolar ribonucleoprotein complex subunit (SOF1). (429 aa)
ABOM_009704U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (697 aa)
ABOM_012055ATP-dependent RNA helicase dbp8; Belongs to the DEAD box helicase family. (523 aa)
ABOM_009677Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (355 aa)
ABOM_010258Pre-rRNA processing protein Tsr1. (794 aa)
ABOM_009895Putative pectate lyase. (234 aa)
ABOM_010130Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (515 aa)
ABOM_010370rRNA biogenesis protein RRP5. (1832 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (806 aa)
ABOM_010259U3 small nucleolar RNA-associated protein 7. (535 aa)
ABOM_010055rRNA processing protein Nop9. (707 aa)
ABOM_010688Putative rRNA maturation protein (Nop14). (885 aa)
ABOM_009787SnoRNA binding protein. (1015 aa)
ABOM_009769rRNA processing protein Bystin. (496 aa)
ABOM_010124KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (362 aa)
ABOM_010188Putative small nucleolar ribonucleoprotein complex component (Utp5). (847 aa)
ABOM_010013Ribosome biogenesis protein. (331 aa)
ABOM_010866Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (298 aa)
ABOM_011775Nuclear protein involved in pre-rRNA processing. (320 aa)
ABOM_011173F-box domain protein. (999 aa)
ABOM_007328Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (302 aa)
ABOM_006870U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (726 aa)
ABOM_008566Ribosome biogenesis protein NSA2. (263 aa)
ABOM_007183rRNA processing protein RRP15. (301 aa)
ABOM_011343Protein bfr2. (558 aa)
ABOM_010796AAA family ATPase. (753 aa)
ABOM_012062ATP-dependent RNA helicase dbp3; Belongs to the DEAD box helicase family. (498 aa)
ABOM_005537rRNA processing protein Utp6. (395 aa)
ABOM_006272Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (220 aa)
ABOM_005170U3 small nucleolar RNA-associated protein 22. (1110 aa)
ABOM_005258Uncharacterized protein. (292 aa)
ABOM_005342Small nucleolar ribonucleoprotein complex subunit. (611 aa)
ABOM_012244WD domain protein. (931 aa)
ABOM_012014rRNA processing protein gar2. (447 aa)
ABOM_003815Uncharacterized protein. (240 aa)
ABOM_005373rRNA processing protein. (313 aa)
ABOM_005414Ribosome biogenesis protein BRX1. (364 aa)
ABOM_003733rRNA processing protein RRP9. (621 aa)
ABOM_004191CCAAT-box-binding transcription factor. (1125 aa)
ABOM_004161Ribosomal RNA processing protein. (313 aa)
ABOM_004184Uncharacterized protein. (1673 aa)
ABOM_002395U3 small nucleolar ribonucleoprotein IMP4. (299 aa)
ABOM_003049rRNA-processing protein fcf1. (191 aa)
ABOM_004037ATP-dependent RNA helicase dbp6. (872 aa)
ABOM_002269Putative small nucleolar ribonucleoprotein complex subunit Utp14. (967 aa)
ABOM_004093RNA helicase. (797 aa)
ABOM_004097ATP-dependent RNA helicase DBP10. (926 aa)
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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