STRINGSTRING
ABOM_008473 ABOM_008473 ABOM_009704 ABOM_009704 ABOM_009787 ABOM_009787 ABOM_010188 ABOM_010188 ABOM_011343 ABOM_011343 ABOM_011297 ABOM_011297 ABOM_011173 ABOM_011173 ABOM_005267 ABOM_005267 ABOM_005157 ABOM_005157 ABOM_004569 ABOM_004569 ABOM_000318 ABOM_000318 ABOM_000456 ABOM_000456 ABOM_000850 ABOM_000850 ABOM_001226 ABOM_001226 ABOM_002395 ABOM_002395 ABOM_004184 ABOM_004184 ABOM_004191 ABOM_004191 ABOM_005161 ABOM_005161 ABOM_004412 ABOM_004412 ABOM_005537 ABOM_005537 ABOM_005365 ABOM_005365 NAT10 NAT10 ABOM_007085 ABOM_007085 ABOM_006181 ABOM_006181 ABOM_007028 ABOM_007028 ABOM_007328 ABOM_007328 ABOM_008115 ABOM_008115 ABOM_005170 ABOM_005170 ABOM_010688 ABOM_010688 ABOM_010130 ABOM_010130 ABOM_009895 ABOM_009895 ABOM_009677 ABOM_009677 ABOM_012055 ABOM_012055 ABOM_011650 ABOM_011650 ABOM_012014 ABOM_012014 ABOM_005258 ABOM_005258 ABOM_005342 ABOM_005342
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ABOM_00847360S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
ABOM_009704U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (697 aa)
ABOM_009787SnoRNA binding protein. (1015 aa)
ABOM_010188Putative small nucleolar ribonucleoprotein complex component (Utp5). (847 aa)
ABOM_011343Protein bfr2. (558 aa)
ABOM_011297RNA helicase. (638 aa)
ABOM_011173F-box domain protein. (999 aa)
ABOM_005267RNA binding protein. (328 aa)
ABOM_005157ATP-dependent RNA helicase rok1. (727 aa)
ABOM_004569Zn(II)2Cys6 transcription factor. (736 aa)
ABOM_000318RNA-3'-phosphate cyclase family protein. (402 aa)
ABOM_000456Ribosome biogenesis protein Noc4. (550 aa)
ABOM_000850WD repeat protein. (720 aa)
ABOM_001226rRNA biogenesis protein rrp36. (349 aa)
ABOM_002395U3 small nucleolar ribonucleoprotein IMP4. (299 aa)
ABOM_004184Uncharacterized protein. (1673 aa)
ABOM_004191CCAAT-box-binding transcription factor. (1125 aa)
ABOM_005161Putative ribosome assembly protein Noc2. (779 aa)
ABOM_004412RNA helicase. (595 aa)
ABOM_005537rRNA processing protein Utp6. (395 aa)
ABOM_005365Small nucleolar ribonucleoprotein complex subunit Dip2. (956 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1069 aa)
ABOM_007085Putative U3 small nucleolar ribonucleoprotein subunit (Imp3). (188 aa)
ABOM_006181Periodic tryptophan protein 2. (900 aa)
ABOM_007028Ribosomal protein S23 (S12); Belongs to the universal ribosomal protein uS12 family. (145 aa)
ABOM_007328Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (302 aa)
ABOM_008115RRP7 superfamily domain-containing protein. (310 aa)
ABOM_005170U3 small nucleolar RNA-associated protein 22. (1110 aa)
ABOM_010688Putative rRNA maturation protein (Nop14). (885 aa)
ABOM_010130Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (515 aa)
ABOM_009895Putative pectate lyase. (234 aa)
ABOM_009677Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (355 aa)
ABOM_012055ATP-dependent RNA helicase dbp8; Belongs to the DEAD box helicase family. (523 aa)
ABOM_011650Putative RING finger domain protein (Rnf10). (644 aa)
ABOM_012014rRNA processing protein gar2. (447 aa)
ABOM_005258Uncharacterized protein. (292 aa)
ABOM_005342Small nucleolar ribonucleoprotein complex subunit. (611 aa)
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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