12 items (Aspergillus bombycis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABOM_011775	Nuclear protein involved in pre-rRNA processing. (320 aa)
	ABOM_009769	rRNA processing protein Bystin. (496 aa)
	ABOM_010688	Putative rRNA maturation protein (Nop14). (885 aa)
	ABOM_010055	rRNA processing protein Nop9. (707 aa)
	ABOM_010258	Pre-rRNA processing protein Tsr1. (794 aa)
	ABOM_007835	Serine/threonine-protein kinase rio2. (403 aa)
	ABOM_006956	Low-temperature viability protein ltv1. (486 aa)
	ABOM_005419	Uncharacterized protein. (177 aa)
	ABOM_004161	Ribosomal RNA processing protein. (313 aa)
	ABOM_001000	HEAT repeat protein (DRIM). (2614 aa)
	ABOM_000456	Ribosome biogenesis protein Noc4. (550 aa)
	ABOM_012014	rRNA processing protein gar2. (447 aa)

Your Current Organism:

Aspergillus bombycis

NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABOM_000456	ABOM_001000	A0A1F8AG11	A0A1F8AFF2	Ribosome biogenesis protein Noc4.	HEAT repeat protein (DRIM).	0.999
ABOM_000456	ABOM_004161	A0A1F8AG11	A0A1F8A7I0	Ribosome biogenesis protein Noc4.	Ribosomal RNA processing protein.	0.915
ABOM_000456	ABOM_006956	A0A1F8AG11	A0A1F7ZYB8	Ribosome biogenesis protein Noc4.	Low-temperature viability protein ltv1.	0.867
ABOM_000456	ABOM_007835	A0A1F8AG11	A0A1F7ZVF9	Ribosome biogenesis protein Noc4.	Serine/threonine-protein kinase rio2.	0.718
ABOM_000456	ABOM_009769	A0A1F8AG11	A0A1F7ZP91	Ribosome biogenesis protein Noc4.	rRNA processing protein Bystin.	0.998
ABOM_000456	ABOM_010055	A0A1F8AG11	A0A1F7ZPK2	Ribosome biogenesis protein Noc4.	rRNA processing protein Nop9.	0.607
ABOM_000456	ABOM_010258	A0A1F8AG11	A0A1F7ZQN4	Ribosome biogenesis protein Noc4.	Pre-rRNA processing protein Tsr1.	0.815
ABOM_000456	ABOM_010688	A0A1F8AG11	A0A1F7ZPE5	Ribosome biogenesis protein Noc4.	Putative rRNA maturation protein (Nop14).	0.999
ABOM_000456	ABOM_012014	A0A1F8AG11	A0A1F7ZIN0	Ribosome biogenesis protein Noc4.	rRNA processing protein gar2.	0.875
ABOM_001000	ABOM_000456	A0A1F8AFF2	A0A1F8AG11	HEAT repeat protein (DRIM).	Ribosome biogenesis protein Noc4.	0.999
ABOM_001000	ABOM_004161	A0A1F8AFF2	A0A1F8A7I0	HEAT repeat protein (DRIM).	Ribosomal RNA processing protein.	0.715
ABOM_001000	ABOM_006956	A0A1F8AFF2	A0A1F7ZYB8	HEAT repeat protein (DRIM).	Low-temperature viability protein ltv1.	0.628
ABOM_001000	ABOM_009769	A0A1F8AFF2	A0A1F7ZP91	HEAT repeat protein (DRIM).	rRNA processing protein Bystin.	0.994
ABOM_001000	ABOM_010258	A0A1F8AFF2	A0A1F7ZQN4	HEAT repeat protein (DRIM).	Pre-rRNA processing protein Tsr1.	0.797
ABOM_001000	ABOM_010688	A0A1F8AFF2	A0A1F7ZPE5	HEAT repeat protein (DRIM).	Putative rRNA maturation protein (Nop14).	0.999
ABOM_001000	ABOM_012014	A0A1F8AFF2	A0A1F7ZIN0	HEAT repeat protein (DRIM).	rRNA processing protein gar2.	0.806
ABOM_004161	ABOM_000456	A0A1F8A7I0	A0A1F8AG11	Ribosomal RNA processing protein.	Ribosome biogenesis protein Noc4.	0.915
ABOM_004161	ABOM_001000	A0A1F8A7I0	A0A1F8AFF2	Ribosomal RNA processing protein.	HEAT repeat protein (DRIM).	0.715
ABOM_004161	ABOM_006956	A0A1F8A7I0	A0A1F7ZYB8	Ribosomal RNA processing protein.	Low-temperature viability protein ltv1.	0.782
ABOM_004161	ABOM_007835	A0A1F8A7I0	A0A1F7ZVF9	Ribosomal RNA processing protein.	Serine/threonine-protein kinase rio2.	0.648