STRINGSTRING
ABOM_001392 ABOM_001392 ABOM_004093 ABOM_004093 ABOM_012244 ABOM_012244 ABOM_011343 ABOM_011343 ABOM_010866 ABOM_010866 ABOM_010124 ABOM_010124 ABOM_010259 ABOM_010259 ABOM_010370 ABOM_010370 ABOM_008670 ABOM_008670 ABOM_007489 ABOM_007489 ABOM_006870 ABOM_006870 ABOM_007201 ABOM_007201 ABOM_005373 ABOM_005373 ABOM_003733 ABOM_003733 ABOM_003049 ABOM_003049 ABOM_002269 ABOM_002269 ABOM_001000 ABOM_001000 ABOM_001199 ABOM_001199
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ABOM_001392U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (287 aa)
ABOM_004093RNA helicase. (797 aa)
ABOM_012244WD domain protein. (931 aa)
ABOM_011343Protein bfr2. (558 aa)
ABOM_010866Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (298 aa)
ABOM_010124KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (362 aa)
ABOM_010259U3 small nucleolar RNA-associated protein 7. (535 aa)
ABOM_010370rRNA biogenesis protein RRP5. (1832 aa)
ABOM_008670Uncharacterized protein. (836 aa)
ABOM_007489Small nucleolar ribonucleoprotein complex subunit (SOF1). (429 aa)
ABOM_006870U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (726 aa)
ABOM_007201Sas10/Utp3 family protein. (648 aa)
ABOM_005373rRNA processing protein. (313 aa)
ABOM_003733rRNA processing protein RRP9. (621 aa)
ABOM_003049rRNA-processing protein fcf1. (191 aa)
ABOM_002269Putative small nucleolar ribonucleoprotein complex subunit Utp14. (967 aa)
ABOM_001000HEAT repeat protein (DRIM). (2614 aa)
ABOM_001199DEAH-box RNA helicase (Dhr1). (1147 aa)
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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