20 items (Aspergillus bombycis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABOM_007014	Protein LST8. (401 aa)
	ABOM_001857	Secreted protein. (568 aa)
	ABOM_005365	Small nucleolar ribonucleoprotein complex subunit Dip2. (956 aa)
	ABOM_005673	Putative sulfur metabolite repression control protein SconB. (705 aa)
	ABOM_005351	Actin cortical patch component. (791 aa)
	ABOM_004184	Uncharacterized protein. (1673 aa)
	ABOM_004231	Uncharacterized protein. (1310 aa)
	ABOM_002672	Uncharacterized protein. (396 aa)
	ABOM_003562	Uncharacterized protein. (615 aa)
	ABOM_004085	UV-damaged DNA binding protein. (1146 aa)
	ABOM_000352	Uncharacterized protein. (593 aa)
	ABOM_006313	WD repeat protein. (1050 aa)
	PAN2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1133 aa)
	ABOM_008995	Protein kinase and ribonuclease Ire1. (1144 aa)
	ABOM_008323	EMC1_C domain-containing protein. (1447 aa)
	ABOM_008763	RNA polymerase II Elongator subunit. (810 aa)
	ABOM_009983	NACHT and WD40 domain protein. (1494 aa)
	ABOM_000583	Non-repetitive nucleoporin. (1363 aa)
	ABOM_009787	SnoRNA binding protein. (1015 aa)
	ABOM_006181	Periodic tryptophan protein 2. (900 aa)

Your Current Organism:

Aspergillus bombycis

NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABOM_000583	ABOM_004231	A0A1F8AGK7	A0A1F8A8H9	Non-repetitive nucleoporin.	Uncharacterized protein.	0.844
ABOM_000583	ABOM_009983	A0A1F8AGK7	A0A1F7ZQF1	Non-repetitive nucleoporin.	NACHT and WD40 domain protein.	0.490
ABOM_004085	ABOM_009983	A0A1F8ACW5	A0A1F7ZQF1	UV-damaged DNA binding protein.	NACHT and WD40 domain protein.	0.626
ABOM_004184	ABOM_005365	A0A1F8A8G0	A0A1F8A1T5	Uncharacterized protein.	Small nucleolar ribonucleoprotein complex subunit Dip2.	0.992
ABOM_004184	ABOM_008763	A0A1F8A8G0	A0A1F7ZR86	Uncharacterized protein.	RNA polymerase II Elongator subunit.	0.544
ABOM_004184	ABOM_009787	A0A1F8A8G0	A0A1F7ZP93	Uncharacterized protein.	SnoRNA binding protein.	0.993
ABOM_004231	ABOM_000583	A0A1F8A8H9	A0A1F8AGK7	Uncharacterized protein.	Non-repetitive nucleoporin.	0.844
ABOM_005365	ABOM_004184	A0A1F8A1T5	A0A1F8A8G0	Small nucleolar ribonucleoprotein complex subunit Dip2.	Uncharacterized protein.	0.992
ABOM_005365	ABOM_006181	A0A1F8A1T5	A0A1F7ZZC8	Small nucleolar ribonucleoprotein complex subunit Dip2.	Periodic tryptophan protein 2.	0.999
ABOM_005365	ABOM_008763	A0A1F8A1T5	A0A1F7ZR86	Small nucleolar ribonucleoprotein complex subunit Dip2.	RNA polymerase II Elongator subunit.	0.808
ABOM_005365	ABOM_009787	A0A1F8A1T5	A0A1F7ZP93	Small nucleolar ribonucleoprotein complex subunit Dip2.	SnoRNA binding protein.	0.999
ABOM_006181	ABOM_005365	A0A1F7ZZC8	A0A1F8A1T5	Periodic tryptophan protein 2.	Small nucleolar ribonucleoprotein complex subunit Dip2.	0.999
ABOM_006181	ABOM_008763	A0A1F7ZZC8	A0A1F7ZR86	Periodic tryptophan protein 2.	RNA polymerase II Elongator subunit.	0.665
ABOM_006181	ABOM_009787	A0A1F7ZZC8	A0A1F7ZP93	Periodic tryptophan protein 2.	SnoRNA binding protein.	0.999
ABOM_008763	ABOM_004184	A0A1F7ZR86	A0A1F8A8G0	RNA polymerase II Elongator subunit.	Uncharacterized protein.	0.544
ABOM_008763	ABOM_005365	A0A1F7ZR86	A0A1F8A1T5	RNA polymerase II Elongator subunit.	Small nucleolar ribonucleoprotein complex subunit Dip2.	0.808
ABOM_008763	ABOM_006181	A0A1F7ZR86	A0A1F7ZZC8	RNA polymerase II Elongator subunit.	Periodic tryptophan protein 2.	0.665
ABOM_008763	ABOM_009787	A0A1F7ZR86	A0A1F7ZP93	RNA polymerase II Elongator subunit.	SnoRNA binding protein.	0.826
ABOM_009787	ABOM_004184	A0A1F7ZP93	A0A1F8A8G0	SnoRNA binding protein.	Uncharacterized protein.	0.993
ABOM_009787	ABOM_005365	A0A1F7ZP93	A0A1F8A1T5	SnoRNA binding protein.	Small nucleolar ribonucleoprotein complex subunit Dip2.	0.999