14 items (Aspergillus bombycis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABOM_011956	Cell division control protein 48; Belongs to the AAA ATPase family. (821 aa)
	ABOM_011756	Putative membrane-spanning ATPase; Belongs to the AAA ATPase family. (417 aa)
	ABOM_011153	Putative mitochondrial inner membrane AAA protease Yta12. (874 aa)
	ABOM_011121	Peroxisome biosynthesis protein (PAS1/Peroxin-1). (1207 aa)
	ABOM_010810	Proteasome regulatory particle subunit Rpt6; Belongs to the AAA ATPase family. (389 aa)
	ABOM_007506	Proteasome regulatory particle subunit Rpt5; Belongs to the AAA ATPase family. (462 aa)
	ABOM_007660	Vesicular-fusion protein sec18. (845 aa)
	ABOM_006888	AAA family ATPase/60S ribosome export protein Rix7. (741 aa)
	ABOM_010796	AAA family ATPase. (753 aa)
	ABOM_001289	AAA family ATPase. (768 aa)
	ABOM_001057	WD repeat protein. (1058 aa)
	ABOM_011569	Protein YME1. (794 aa)
	ABOM_010262	Putative mitochondrial AAA ATPase. (985 aa)
	ABOM_009239	Proteasome regulatory particle subunit Rpt4; Belongs to the AAA ATPase family. (393 aa)

Your Current Organism:

Aspergillus bombycis

NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABOM_001057	ABOM_001289	A0A1F8AEP1	A0A1F8AE67	WD repeat protein.	AAA family ATPase.	0.423
ABOM_001057	ABOM_006888	A0A1F8AEP1	A0A1F7ZWC0	WD repeat protein.	AAA family ATPase/60S ribosome export protein Rix7.	0.472
ABOM_001057	ABOM_007506	A0A1F8AEP1	A0A1F7ZTW7	WD repeat protein.	Proteasome regulatory particle subunit Rpt5; Belongs to the AAA ATPase family.	0.999
ABOM_001057	ABOM_007660	A0A1F8AEP1	A0A1F7ZV93	WD repeat protein.	Vesicular-fusion protein sec18.	0.423
ABOM_001057	ABOM_009239	A0A1F8AEP1	A0A1F7ZQQ1	WD repeat protein.	Proteasome regulatory particle subunit Rpt4; Belongs to the AAA ATPase family.	0.999
ABOM_001057	ABOM_010262	A0A1F8AEP1	A0A1F7ZPQ4	WD repeat protein.	Putative mitochondrial AAA ATPase.	0.423
ABOM_001057	ABOM_010796	A0A1F8AEP1	A0A1F7ZLU3	WD repeat protein.	AAA family ATPase.	0.826
ABOM_001057	ABOM_010810	A0A1F8AEP1	A0A1F7ZLR3	WD repeat protein.	Proteasome regulatory particle subunit Rpt6; Belongs to the AAA ATPase family.	0.999
ABOM_001057	ABOM_011121	A0A1F8AEP1	A0A1F7ZLC8	WD repeat protein.	Peroxisome biosynthesis protein (PAS1/Peroxin-1).	0.423
ABOM_001057	ABOM_011756	A0A1F8AEP1	A0A1F7ZJG7	WD repeat protein.	Putative membrane-spanning ATPase; Belongs to the AAA ATPase family.	0.461
ABOM_001057	ABOM_011956	A0A1F8AEP1	A0A1F7ZJ14	WD repeat protein.	Cell division control protein 48; Belongs to the AAA ATPase family.	0.822
ABOM_001289	ABOM_001057	A0A1F8AE67	A0A1F8AEP1	AAA family ATPase.	WD repeat protein.	0.423
ABOM_001289	ABOM_007506	A0A1F8AE67	A0A1F7ZTW7	AAA family ATPase.	Proteasome regulatory particle subunit Rpt5; Belongs to the AAA ATPase family.	0.465
ABOM_001289	ABOM_009239	A0A1F8AE67	A0A1F7ZQQ1	AAA family ATPase.	Proteasome regulatory particle subunit Rpt4; Belongs to the AAA ATPase family.	0.454
ABOM_001289	ABOM_010810	A0A1F8AE67	A0A1F7ZLR3	AAA family ATPase.	Proteasome regulatory particle subunit Rpt6; Belongs to the AAA ATPase family.	0.423
ABOM_006888	ABOM_001057	A0A1F7ZWC0	A0A1F8AEP1	AAA family ATPase/60S ribosome export protein Rix7.	WD repeat protein.	0.472
ABOM_006888	ABOM_007506	A0A1F7ZWC0	A0A1F7ZTW7	AAA family ATPase/60S ribosome export protein Rix7.	Proteasome regulatory particle subunit Rpt5; Belongs to the AAA ATPase family.	0.454
ABOM_006888	ABOM_009239	A0A1F7ZWC0	A0A1F7ZQQ1	AAA family ATPase/60S ribosome export protein Rix7.	Proteasome regulatory particle subunit Rpt4; Belongs to the AAA ATPase family.	0.446
ABOM_006888	ABOM_010796	A0A1F7ZWC0	A0A1F7ZLU3	AAA family ATPase/60S ribosome export protein Rix7.	AAA family ATPase.	0.522
ABOM_006888	ABOM_010810	A0A1F7ZWC0	A0A1F7ZLR3	AAA family ATPase/60S ribosome export protein Rix7.	Proteasome regulatory particle subunit Rpt6; Belongs to the AAA ATPase family.	0.457