STRINGSTRING
ABOM_011936 ABOM_011936 ABOM_009216 ABOM_009216 ABOM_008522 ABOM_008522 ABOM_007576 ABOM_007576 LSM8 LSM8 ABOM_007085 ABOM_007085 LSM1 LSM1 ABOM_000761 ABOM_000761 ABOM_000587 ABOM_000587 ABOM_000604 ABOM_000604 ABOM_002480 ABOM_002480 ABOM_002979 ABOM_002979 ABOM_002269 ABOM_002269 ABOM_005365 ABOM_005365 ABOM_005356 ABOM_005356 ABOM_005342 ABOM_005342 ABOM_005344 ABOM_005344 ABOM_003730 ABOM_003730 ABOM_003708 ABOM_003708 ABOM_002395 ABOM_002395 ABOM_007489 ABOM_007489 ABOM_009704 ABOM_009704 ABOM_008594 ABOM_008594 ABOM_010188 ABOM_010188 ABOM_010028 ABOM_010028 ABOM_011060 ABOM_011060 ABOM_010658 ABOM_010658 ABOM_011258 ABOM_011258
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ABOM_011936Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (122 aa)
ABOM_009216Small nuclear ribonucleoprotein Sm D3. (116 aa)
ABOM_008522Putative small nucleolar ribonucleoprotein complex subunit. (952 aa)
ABOM_007576U3 small nucleolar ribonucleoprotein Lcp5. (384 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
ABOM_007085Putative U3 small nucleolar ribonucleoprotein subunit (Imp3). (188 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (174 aa)
ABOM_000761Transformer-SR ribonucleoprotein. (308 aa)
ABOM_000587Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (95 aa)
ABOM_000604Ribonucleoprotein. (324 aa)
ABOM_002480U4/U6 small nuclear ribonucleoprotein. (589 aa)
ABOM_002979U1 small nuclear ribonucleoprotein 70 kDa. (365 aa)
ABOM_002269Putative small nucleolar ribonucleoprotein complex subunit Utp14. (967 aa)
ABOM_005365Small nucleolar ribonucleoprotein complex subunit Dip2. (956 aa)
ABOM_005356Heterogeneous nuclear ribonucleoprotein HRP1. (557 aa)
ABOM_005342Small nucleolar ribonucleoprotein complex subunit. (611 aa)
ABOM_005344Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
ABOM_003730Putative small nucleolar ribonucleoprotein complex subunit. (980 aa)
ABOM_003708Mitochondrial pyruvate carrier; Mediates the uptake of pyruvate into mitochondria. Belongs to the mitochondrial pyruvate carrier (MPC) (TC 2.A.105) family. (379 aa)
ABOM_002395U3 small nucleolar ribonucleoprotein IMP4. (299 aa)
ABOM_007489Small nucleolar ribonucleoprotein complex subunit (SOF1). (429 aa)
ABOM_009704U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (697 aa)
ABOM_008594Small nuclear ribonucleoprotein U2. (251 aa)
ABOM_010188Putative small nucleolar ribonucleoprotein complex component (Utp5). (847 aa)
ABOM_010028Small nuclear ribonucleoprotein G. (78 aa)
ABOM_011060Small nuclear ribonucleoprotein Sm D2. (118 aa)
ABOM_010658Small nucleolar ribonucleoprotein complex subunit Utp15. (541 aa)
ABOM_011258U5 small nuclear ribonucleoprotein component. (985 aa)
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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