(15 nodes) FCERI mediated MAPK activation network (Aspergillus bombycis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABOM_007907	APH domain-containing protein. (132 aa)
	ABOM_008196	ANK_REP_REGION domain-containing protein. (269 aa)
	ABOM_006805	Cytokinesis protein sepH. (1348 aa)
	ABOM_006542	MAP kinase kinase (Mkk2); Belongs to the protein kinase superfamily. (471 aa)
	ABOM_004796	Ankyrin repeat-containing protein. (447 aa)
	ABOM_012153	Uncharacterized protein. (460 aa)
	ABOM_005207	MAP kinase kinase Ste7. (522 aa)
	ABOM_005143	Protein kinase wis1. (637 aa)
	ABOM_002149	APH domain-containing protein. (613 aa)
	ABOM_002665	D-ser_dehydrat domain-containing protein. (421 aa)
	ABOM_002256	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation. (101 aa)
	ABOM_001902	Uncharacterized protein. (205 aa)
	ABOM_001079	Zn(2)-C6 fungal-type domain-containing protein. (1129 aa)
	ABOM_000311	APH domain-containing protein. (269 aa)
	ABOM_000614	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase. (185 aa)

Your Current Organism:

Aspergillus bombycis

NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABOM_000311	ABOM_006805	A0A1F8AHC2	A0A1F7ZXZ8	APH domain-containing protein.	Cytokinesis protein sepH.	0.492
ABOM_001079	ABOM_006805	A0A1F8AG76	A0A1F7ZXZ8	Zn(2)-C6 fungal-type domain-containing protein.	Cytokinesis protein sepH.	0.492
ABOM_001902	ABOM_006805	A0A1F8AD87	A0A1F7ZXZ8	Uncharacterized protein.	Cytokinesis protein sepH.	0.492
ABOM_002149	ABOM_006805	A0A1F8A917	A0A1F7ZXZ8	APH domain-containing protein.	Cytokinesis protein sepH.	0.492
ABOM_002256	ABOM_006805	A0A1F8ABP5	A0A1F7ZXZ8	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Cytokinesis protein sepH.	0.492
ABOM_005143	ABOM_005207	A0A1F8A4Y5	A0A1F8A3Q6	Protein kinase wis1.	MAP kinase kinase Ste7.	0.856
ABOM_005143	ABOM_006542	A0A1F8A4Y5	A0A1F7ZYQ9	Protein kinase wis1.	MAP kinase kinase (Mkk2); Belongs to the protein kinase superfamily.	0.526
ABOM_005143	ABOM_006805	A0A1F8A4Y5	A0A1F7ZXZ8	Protein kinase wis1.	Cytokinesis protein sepH.	0.762
ABOM_005207	ABOM_005143	A0A1F8A3Q6	A0A1F8A4Y5	MAP kinase kinase Ste7.	Protein kinase wis1.	0.856
ABOM_005207	ABOM_006542	A0A1F8A3Q6	A0A1F7ZYQ9	MAP kinase kinase Ste7.	MAP kinase kinase (Mkk2); Belongs to the protein kinase superfamily.	0.681
ABOM_005207	ABOM_006805	A0A1F8A3Q6	A0A1F7ZXZ8	MAP kinase kinase Ste7.	Cytokinesis protein sepH.	0.778
ABOM_006542	ABOM_005143	A0A1F7ZYQ9	A0A1F8A4Y5	MAP kinase kinase (Mkk2); Belongs to the protein kinase superfamily.	Protein kinase wis1.	0.526
ABOM_006542	ABOM_005207	A0A1F7ZYQ9	A0A1F8A3Q6	MAP kinase kinase (Mkk2); Belongs to the protein kinase superfamily.	MAP kinase kinase Ste7.	0.681
ABOM_006542	ABOM_006805	A0A1F7ZYQ9	A0A1F7ZXZ8	MAP kinase kinase (Mkk2); Belongs to the protein kinase superfamily.	Cytokinesis protein sepH.	0.779
ABOM_006805	ABOM_000311	A0A1F7ZXZ8	A0A1F8AHC2	Cytokinesis protein sepH.	APH domain-containing protein.	0.492
ABOM_006805	ABOM_001079	A0A1F7ZXZ8	A0A1F8AG76	Cytokinesis protein sepH.	Zn(2)-C6 fungal-type domain-containing protein.	0.492
ABOM_006805	ABOM_001902	A0A1F7ZXZ8	A0A1F8AD87	Cytokinesis protein sepH.	Uncharacterized protein.	0.492
ABOM_006805	ABOM_002149	A0A1F7ZXZ8	A0A1F8A917	Cytokinesis protein sepH.	APH domain-containing protein.	0.492
ABOM_006805	ABOM_002256	A0A1F7ZXZ8	A0A1F8ABP5	Cytokinesis protein sepH.	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.492
ABOM_006805	ABOM_005143	A0A1F7ZXZ8	A0A1F8A4Y5	Cytokinesis protein sepH.	Protein kinase wis1.	0.762