(62 nodes) Basal transcription factors network (Aspergillus bombycis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	ABOM_011550	PHD finger domain protein. (413 aa)
	ABOM_011538	Uncharacterized protein. (60 aa)
	ABOM_011935	Putative methyltransferase. (271 aa)
	ABOM_001411	Transcription factor IIA. (405 aa)
	ABOM_011978	Chromatin modification-related protein. (629 aa)
	ABOM_011976	RNA polymerase II transcription factor subunit 1. (683 aa)
	ABOM_012236	RNA binding protein (Arp). (286 aa)
	ABOM_001394	Transcription initiation factor TFIID. (287 aa)
	ABOM_004136	HNHc domain-containing protein. (212 aa)
	ABOM_002318	C6 zinc finger domain protein. (754 aa)
	ABOM_002028	Epimerase domain-containing protein. (298 aa)
	ABOM_002410	Urb2 domain-containing protein. (1463 aa)
	ABOM_002482	TFIIH complex helicase Rad3. (794 aa)
	ABOM_003452	Uncharacterized protein. (699 aa)
	ABOM_002588	Uncharacterized protein. (484 aa)
	ABOM_004282	pH-response regulator protein palC. (812 aa)
	ABOM_004283	Putative transcription initiation factor TFIID subunit 7. (482 aa)
	ABOM_005226	Putative transcription initiation factor TFIID subunit 12. (602 aa)
	ABOM_005992	RNA binding protein (Arp). (300 aa)
	ABOM_006488	Uncharacterized protein. (1091 aa)
	ABOM_005904	Trimethylguanosine synthase. (1112 aa)
	ABOM_006471	Transcription initiation factor TFIID subunit. (740 aa)
	ABOM_006433	Bromodomain associated domain protein. (348 aa)
	ABOM_006458	Fungal_trans domain-containing protein. (560 aa)
	ABOM_006158	Putative TFIIH complex helicase Ssl2. (812 aa)
	ABOM_007098	Transcription factor TFIIE complex alpha subunit. (442 aa)
	ABOM_006736	Uncharacterized protein. (742 aa)
	ABOM_007256	Putative transcription factor IIIc-like protein. (631 aa)
	ABOM_007333	HMG box protein. (350 aa)
	ABOM_006868	Transcription initiation factor TFIID subunit 13. (257 aa)
	ABOM_007142	TFIIH basal transcription factor complex p47 subunit. (216 aa)
	ABOM_008087	Putative cell cycle control protein TINC. (736 aa)
	ABOM_009417	Kinesin family protein (KipA); Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1257 aa)
	ABOM_009101	Transcription initiation factor IIB. (350 aa)
	ABOM_009328	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (281 aa)
	ABOM_009349	Transcription factor TFIIH complex subunit. (376 aa)
	ABOM_009873	C6 transcription factor. (1367 aa)
	ABOM_009669	Uncharacterized protein. (668 aa)
	ABOM_008909	Putative rRNA processing protein (Ebp2). (374 aa)
	ABOM_009971	RNA polymerase II transcription factor B subunit 5. (73 aa)
	ABOM_009730	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (142 aa)
	ABOM_009729	Uncharacterized protein. (284 aa)
	ABOM_010370	rRNA biogenesis protein RRP5. (1832 aa)
	ABOM_008902	Transcription factor TFIIF complex subunit. (231 aa)
	ABOM_010403	TATA-box-binding protein. (268 aa)
	ABOM_010401	Pre-RNA splicing factor Srp2. (259 aa)
	ABOM_009780	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (714 aa)
	ABOM_010300	Chromatin modification-related protein. (721 aa)
	ABOM_010790	Transcription initiation factor TFIID complex subunit. (445 aa)
	ABOM_010027	TATA-binding protein associated factor Taf2. (1247 aa)
	ABOM_010955	NAD dependent epimerase/dehydratase. (224 aa)
	ABOM_011007	Uncharacterized protein. (659 aa)
	ABOM_010454	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (509 aa)
	ABOM_000392	Uncharacterized protein. (565 aa)
	ABOM_000294	Uncharacterized protein. (490 aa)
	ABOM_000462	Transcription initiation factor IIF subunit beta. (374 aa)
	ABOM_000568	Fungal specific transcription factor domain protein. (585 aa)
	ABOM_001355	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (291 aa)
	ABOM_001016	RED_N domain-containing protein. (538 aa)
	ABOM_010788	Transcription initiation factor TFIID subunit beta. (374 aa)
	ABOM_011266	Uncharacterized protein. (291 aa)
	ABOM_011423	RNA polymerase II transcription factor B subunit 3. (378 aa)

Your Current Organism:

Aspergillus bombycis

NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABOM_000294	ABOM_005226	A0A1F8AHH1	A0A1F8A2N2	Uncharacterized protein.	Putative transcription initiation factor TFIID subunit 12.	0.465
ABOM_000294	ABOM_005904	A0A1F8AHH1	A0A1F8A1H8	Uncharacterized protein.	Trimethylguanosine synthase.	0.528
ABOM_000294	ABOM_006471	A0A1F8AHH1	A0A1F8A1H1	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.456
ABOM_000294	ABOM_008902	A0A1F8AHH1	A0A1F7ZPX5	Uncharacterized protein.	Transcription factor TFIIF complex subunit.	0.410
ABOM_000294	ABOM_009328	A0A1F8AHH1	A0A1F7ZRV4	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.513
ABOM_000294	ABOM_010027	A0A1F8AHH1	A0A1F7ZN43	Uncharacterized protein.	TATA-binding protein associated factor Taf2.	0.518
ABOM_000294	ABOM_010403	A0A1F8AHH1	A0A1F7ZPG1	Uncharacterized protein.	TATA-box-binding protein.	0.421
ABOM_000294	ABOM_010788	A0A1F8AHH1	A0A1F7ZM85	Uncharacterized protein.	Transcription initiation factor TFIID subunit beta.	0.502
ABOM_000294	ABOM_010790	A0A1F8AHH1	A0A1F7ZNA9	Uncharacterized protein.	Transcription initiation factor TFIID complex subunit.	0.667
ABOM_000392	ABOM_005226	A0A1F8AHK5	A0A1F8A2N2	Uncharacterized protein.	Putative transcription initiation factor TFIID subunit 12.	0.465
ABOM_000392	ABOM_005904	A0A1F8AHK5	A0A1F8A1H8	Uncharacterized protein.	Trimethylguanosine synthase.	0.528
ABOM_000392	ABOM_006471	A0A1F8AHK5	A0A1F8A1H1	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.456
ABOM_000392	ABOM_008902	A0A1F8AHK5	A0A1F7ZPX5	Uncharacterized protein.	Transcription factor TFIIF complex subunit.	0.410
ABOM_000392	ABOM_009328	A0A1F8AHK5	A0A1F7ZRV4	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.513
ABOM_000392	ABOM_010027	A0A1F8AHK5	A0A1F7ZN43	Uncharacterized protein.	TATA-binding protein associated factor Taf2.	0.518
ABOM_000392	ABOM_010403	A0A1F8AHK5	A0A1F7ZPG1	Uncharacterized protein.	TATA-box-binding protein.	0.421
ABOM_000392	ABOM_010788	A0A1F8AHK5	A0A1F7ZM85	Uncharacterized protein.	Transcription initiation factor TFIID subunit beta.	0.502
ABOM_000392	ABOM_010790	A0A1F8AHK5	A0A1F7ZNA9	Uncharacterized protein.	Transcription initiation factor TFIID complex subunit.	0.667
ABOM_000462	ABOM_001355	A0A1F8AGT2	A0A1F8AFJ0	Transcription initiation factor IIF subunit beta.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.992
ABOM_000462	ABOM_001394	A0A1F8AGT2	A0A1F8AED2	Transcription initiation factor IIF subunit beta.	Transcription initiation factor TFIID.	0.886